Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq11241 91.5 2e-13 >seq11241 Length=117455 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 43903 GTTAAAACAGGCCTTAAAGTTGAACTTCCGAATGGTACTTATGGTCGAATTGCTTCAAGA 43962 || ||||| | ||| || | ||| |||| |||||| |||||||||| |||||| || | Sbjct 51256 GTGAAAACTGATCTTCAAATCGAAGTTCCAAATGGTTCTTATGGTCGCATTGCTCCACGT 51197 Query 43963 TCTGGTTTATCCTTTAAAAATGGTATTGAAGTAGGGGCGGGTGTTATCGACGAAGATTAT 44022 || || ||| | |||| ||| ||| || || || || || || |||||||||||||| Sbjct 51196 TCCGGATTAGCAGTTAAGAATTTTATCGATGTCGGCGCTGGGGTAGTCGACGAAGATTAT 51137 Query 44023 C----AAAACGAGTTGATGGTTATTTTACACAACCATTCAGACACAGATTTCAATGTTGA 44078 | || | | || |||| | || ||| || || || | || || | ||| | Sbjct 51136 CGCGGCAACCTTGGTG-TGGTACTATT---CAATCACTCCGATGCCGAATTTGAAGTTAA 51081 Query 44079 AGTGGGAGATAGAATTGCACAAATTATTAT-TGAA 44112 | |||||||||||||||| ||||| ||| |||| Sbjct 51080 ACGTGGAGATAGAATTGCAC-AATTAATATGTGAA 51047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658234591170520