Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10186 399 2e-106 seq10162 347 1e-90 >seq10186 Length=270785 Score = 399 bits (442), Expect = 2e-106 Identities = 1214/1876 (65%), Gaps = 28/1876 (1%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 ||||| ||||||| ||| | ||| ||| | |||||||||||||||||||| || ||| Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTC 27587 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | || |||| ||||||||| || ||| ||||| ||| | ||||| Sbjct 27588 TTGAGGCCAGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTCG 27647 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | | || ||||||| |||||||||||||| || || || || | ||| || ||||| Sbjct 27648 GCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCATT 27707 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 | | | | | | || ||||| || ||||| |||| | | || |||| | Sbjct 27708 TTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTT-T 27766 Query 47217 GGGA----GATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattc 47272 |||| | | | ||||||| ||||| || | | | || || || || || | || Sbjct 27767 GGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATATC 27826 Query 47273 atttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAA 47332 | ||| | | |||| || || || | | ||| |||| ||||| | ||| Sbjct 27827 TTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAAA 27886 Query 47333 TTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATT 47392 ||| || || ||||| | ||| | || ||||| ||| || || || | |||||||| Sbjct 27887 TTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCATT 27946 Query 47393 ATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCT 47452 ||| || | ||| || || || || || |||||||| | ||| | | || || | Sbjct 27947 ATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGCG 28006 Query 47453 TACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAAC 47512 || |||| || || | ||||||||| | || | || || Sbjct 28007 CACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTAC 28066 Query 47513 AACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTT 47572 |||||| | |||||| |||||||| ||||| |||| || ||| |||||||| Sbjct 28067 TTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTTC 28126 Query 47573 ATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGT 47632 ||| ||||| | | | ||| ||||||||||| || ||||| |||| ||| || ||||| Sbjct 28127 ATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTGT 28186 Query 47633 TTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATANNNNNNN 47690 ||| || |||| || || || || ||| | | |||| | || || Sbjct 28187 TTCGAAAATTTGCTGATTAAGCTTGTAGGC--CTGTTCACTTTCATAGGGGTAACGCATC 28244 Query 47691 NNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTA 47750 | || || || || ||||| |||||||||||||| || | ||| | |||| Sbjct 28245 AGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATTG 28304 Query 47751 GAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNN 47810 || ||||| || |||||||| | ||| || || || |||||||| ||| Sbjct 28305 GACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGCGC 28364 Query 47811 NNNNNNNNNNNNACAATTTCTCTT-AATTTATTAAAATCAAACTTGTTATTTATA---AC 47866 | | | |||| ||||| || |||||| || | || | | | || Sbjct 28365 GTAACAACCTTGGCCACAT-TCTTCAATTTCTTGAAATCATACGTCTTTTCTGGAGTCAC 28423 Query 47867 AAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATA 47926 |||| |||| || || || || | |||||| || || | |||| || | || Sbjct 28424 AAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGAGTA 28483 Query 47927 TTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATT 47986 | | ||||| | ||| | ||| | |||||||| || || | |||||| |||||| | Sbjct 28484 CTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACT 28543 Query 47987 NNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTC 48046 || || ||||| ||| | |||||| |||| ||||| ||||| | || | ||| Sbjct 28544 CTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTC 28603 Query 48047 AATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATTATCATG 48103 ||||| | ||| | | | || |||| | | ||| ||||| || | Sbjct 28604 GATGATGGCAAACCATAGCGCCTGCGCTTTTA---CGGTCCTATTGGCTTTGCCTTCCTT 28660 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 ||||||||| || | || |||||||| || || |||||| | || ||| ||||| Sbjct 28661 TTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGACA 28720 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 || | |||||||| | ||||| || ||| | || || | ||||||| | ||| Sbjct 28721 TTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGATC 28780 Query 48224 TGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 || |||||||| || || ||| | ||| || | | | ||||| ||||| | || Sbjct 28781 GGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTTTT 28839 Query 48283 T-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 | ||||| | ||| ||| || | ||||| | |||||||||||| ||||| || || | | Sbjct 28840 TCTTTAAATCCAA-AAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAAT 28898 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | || || ||||| || |||||||| | ||| | ||| |||||| | || ||| Sbjct 28899 GCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACCCTT 28958 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 ||||| || || | |||||| ||| | ||||| || || | |||| || |||| | || Sbjct 28959 AACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGGCG 29018 Query 48462 CTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 | ||| | | |||| || || || || || ||| ||| ||||| | || ||| Sbjct 29019 CGTATACAATGGACATTG--ATGCCAATTCCTCCGGCCGATTTCGATATCATGGCGCACT 29076 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 ||| || | | |||| ||||| || |||| | | ||| | | || |||||| Sbjct 29077 GTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAACAAG 29136 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 |||| || || || || | | | ||||| |||||||| |||||| |||| Sbjct 29137 ACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTAAAGT 29196 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 | || || | ||| || || || || || ||| ||| || || |||||| | Sbjct 29197 AACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTATGC 29256 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 | | || |||||||| | ||| | |||||| || || |||| || ||| ||||||| Sbjct 29257 CCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATTTTCA 29316 Query 48760 AAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 | | ||| || |||||||||||||||| |||||||| ||||| || || ||||| Sbjct 29317 ACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGATCAT 29376 Query 48820 TAATAATTGATGAATT 48835 || ||| | ||||| Sbjct 29377 AAACAATGGCCGAATT 29392 >seq10162 Length=1180275 Score = 347 bits (384), Expect = 1e-90 Identities = 584/836 (70%), Gaps = 13/836 (2%) Strand=Plus/Plus Query 18664 CCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGAT 18723 ||||||||| | ||||| | ||| | |||||||||||| ||||| || || ||||| Sbjct 71332 CCCATTTTTGG-TATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAA 71390 Query 18724 ATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTC 18782 || |||||| || || |||||||| ||| || ||||| | |||| ||||| Sbjct 71391 ATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCC-AATTC 71449 Query 18783 TAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCC 18842 | || || | ||| || ||||||| ||||||| ||| | |||||||||||||| Sbjct 71450 AACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCC 71509 Query 18843 TATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGA 18902 ||||| ||| || || || || || || ||||| ||||| || ||||| || ||| Sbjct 71510 AATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCG 71569 Query 18903 TATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACATCA 18958 || || | ||| || ||| || | |||| | | |||| ||| ||||||| Sbjct 71570 GATGAT---TTCAATAATACGTTCTTT-GCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 18959 AACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTA 19018 |||||||||||||| | || ||||| | ||||||||||| || ||||| | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 19019 AACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGA 19078 | |||||||| || || | ||| || | ||| || || || ||||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 ||||||| || || || ||||| |||| | | ||||||| || |||| ||| | || Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCG-ATTCTGAT 71804 Query 19139 GAA-TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAA 19197 ||| ||||| || |||||||| |||||||| || || ||||||||| || || | | Sbjct 71805 GAAATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCA 71864 Query 19198 TTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 || || ||||| ||| | ||| || |||| |||| ||| |||| | ||| ||| Sbjct 71865 TTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATAC 71924 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 ||||| || |||| |||||| || || || || || || || || || | |||||||| Sbjct 71925 ATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTC 71984 Query 19318 ATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | || || || | || | ||| || ||||||||||| || || |||||| || Sbjct 71985 ACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCG 72044 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA 19437 || ||||| || | ||||| || |||| ||||| |||||| ||| |||| Sbjct 72045 GCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAA 72104 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | | ||||| || | ||| |||||||| ||||||||||| ||||||||||| Sbjct 72105 TCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGC 72160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561964850962680