Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10162 253 2e-62 seq9684 86.0 7e-12 >seq10162 Length=1180275 Score = 253 bits (280), Expect = 2e-62 Identities = 556/824 (67%), Gaps = 13/824 (2%) Strand=Plus/Plus Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGAT 36938 ||||||||| | ||||| || ||| | ||| || |||||||| || || || | ||| Sbjct 71332 CCCATTTTTGG-TATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAA 71390 Query 36939 ATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTA-CATGATAATTC 36997 || ||||||| || || ||||| ||||| || || | | | ||| ||||| Sbjct 71391 ATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCC-AATTC 71449 Query 36998 CTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACC 37057 ||| || | ||| ||||||||||| || |||| |||||| |||| | || || || Sbjct 71450 AACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCC 71509 Query 37058 AATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTT 37117 ||||| || ||| | || || || ||| | ||| ||| ||||||||||| Sbjct 71510 AATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCG 71569 Query 37118 AACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAAACAATA 37173 | || | || |||| ||||| | |||| | | | | |||||| |||| | Sbjct 71570 GATGATTTCAATAATACGTTCTTT-GCTGGG---TTTCTGCACCAGATATTTGAACATCA 71625 Query 37174 AACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTA 37233 |||||||||||||| || ||||| || | ||||||||||| || || || | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 37234 ATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGA 37293 | || ||||||| ||| | ||| |||| |||||| || | |||||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 37294 AAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA- 37352 | ||||| ||||| || ||||| || | || |||| || ||| | | | || | | Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGC-CGATTCTGAT 71804 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 ||||||||| | |||||| ||||| ||||| | ||||||||||| || Sbjct 71805 GAAATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCA 71864 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || || ||| | | || || | || | || || ||||| || || | ||||||| Sbjct 71865 TTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATAC 71924 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 ||||| ||||||| |||||| || || || || || ||||| || || | ||||| | Sbjct 71925 ATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTC 71984 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | ||| || || | | || | | | |||| |||||||| || || |||||| || Sbjct 71985 ACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCG 72044 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAA 37652 || || || || ||||||| ||| |||| | ||||| | || |||| | | |||| Sbjct 72045 GCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAA 72104 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||| | | ||||| || | ||||||||| || || |||||||| Sbjct 72105 TCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 >seq9684 Length=559441 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 || || || ||||| ||||||||||| |||| | | ||| | ||| | ||||||||| Sbjct 346153 GGAGTATTGCATACTAAATTTTGGATTTCTGATCACAGGCATTTTTATTTGGGAAGTGCT 346094 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGT 153389 |||||||| |||||||| ||||| || || |||||| | ||| Sbjct 346093 AATATGGACTGGAGATCTCTAACGCAGGTGAAAGAACTGGGT 346052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592165115071480