Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9744 109 4e-19 seq9576 109 4e-19 >seq9744 Length=475756 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| | || ||| |||||||| ||||||||||||| | ||| Sbjct 179459 AGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGA 179518 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || ||||| || || | |||||||| || | |||| ||| ||| Sbjct 179519 CCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCC 179578 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||||| | | | || || | |||||||||| ||| Sbjct 179579 TTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTA 179638 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 179639 ATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| |||||||||||||||||||||| | || | || || Sbjct 179240 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATCTTCT 179299 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || |||| ||||| || || | ||||| || ||||| || Sbjct 179300 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 179359 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | ||||| | ||| || |||| ||||| ||||| Sbjct 179360 ATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGTTTTA 179419 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||| ||||| Sbjct 179420 CCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| ||||||||||||||||| |||| | || | || || Sbjct 178556 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178615 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || |||| ||||| || || | ||||| || ||||| || Sbjct 178616 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178675 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||| | ||| || |||| ||||| ||||| Sbjct 178676 ATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTA 178735 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||| ||||| Sbjct 178736 CCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| ||||||||||||||||| |||| | ||| | || || Sbjct 179012 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCT 179071 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || || || |||| ||||| || || | ||||| || || || || Sbjct 179072 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGG 179131 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | ||||| | |||||| |||| || || || ||| Sbjct 179132 ATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTT 179191 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||| ||||| Sbjct 179192 CCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 >seq9576 Length=1569244 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || ||||| || || ||||| ||||| | | ||| Sbjct 195871 AGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGA 195812 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || |||| ||||||||||| | |||| || ||| Sbjct 195811 CCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCC 195752 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| || | | || || || | || || |||| || Sbjct 195751 TTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTG 195692 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| ||||| |||||||||||||| Sbjct 195691 ATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||| || | |||||||| || || ||||| || ||||| ||||| ||| Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | ||||||||| ||||| || |||| ||||| || | ||| Sbjct 195592 AATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGA 195533 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||| || ||| || | | || ||||| | ||||||| Sbjct 195532 ATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACC 195473 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || ||||| || || || |||||||| Sbjct 195472 TCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || |||||||| || ||||| ||||| | | ||| Sbjct 196327 AGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGA 196268 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || |||| || |||||||| | |||| || ||| Sbjct 196267 CCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCC 196208 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | || || || | || || |||| || Sbjct 196207 TTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTG 196148 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| |||||||| ||||| ||||| Sbjct 196147 ATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || ||||| || || || || ||||| | | ||| Sbjct 196099 AGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGA 196040 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || |||| || |||||||| | |||| || ||| Sbjct 196039 CCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCTTCC 195980 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| || | | || || || | || || |||| || Sbjct 195979 TTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTG 195920 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || ||||| || || ||||| Sbjct 195919 ATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380842485476301