Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10162 140 6e-28 seq10186 102 2e-16 >seq10162 Length=1180275 Score = 140 bits (154), Expect = 6e-28 Identities = 348/526 (66%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||| || | |||||||||||||| || ||| | | |||||||| | || Sbjct 71630 GGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCC 71689 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||| | || | | || ||||| || || | || ||| || ||| || || Sbjct 71690 AGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATAT 71749 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGA 48311 ||||| || || || ||||| | | | ||||| ||| ||| | | || ||| | Sbjct 71750 ACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGA-TGAAA 71808 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| || | ||||| || ||||||||||| | | |||||| || || ||||| || Sbjct 71809 TCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGA 71868 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | || | | | | | | |||| || || ||| || ||| | ||||| | Sbjct 71869 AAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATTT 71928 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| ||||| || || || || ||||| || |||||| | ||| || ||| | Sbjct 71929 CGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTT 71988 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| ||| ||||| | || | | ||| |||||||| || ||||| || || || | Sbjct 71989 GCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGA 72048 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 | ||||| || ||||| | ||||| ||| || |||| || | || ||| | Sbjct 72049 AAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCAG 72108 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || ||||||| || || ||||||||||| ||||| || || || Sbjct 72109 TTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGC 72154 >seq10186 Length=270785 Score = 102 bits (112), Expect = 2e-16 Identities = 697/1099 (63%), Gaps = 59/1099 (5%) Strand=Plus/Plus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||||| || || | ||||| || | || ||||||||||| || | | ||||| Sbjct 27857 CTTGAGCAAATGGTGATTGACAATATTAAATTCACCTGAGAGTACACGACGTGTGTAAAT 27916 Query 212954 GTTTGAAGTGTAGGGCTCGA-TGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTG 213012 || || ||||||||||| | || | || || || |||| |||||| || || || | Sbjct 27917 ATTCGATGTGTAGGGCTCAAATGAT-TCATTATTACCCATAATCTGGGCTGTAGAAGCAG 27975 Query 213013 TGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAA 213072 | ||||| || || | || | ||| | ||| || |||| | | || | | | Sbjct 27976 TAGGCATTGGTGCTAAGAGCAATGAGTTGCGCACACCATGCTTGGCAATTTTGGCCTTTA 28035 Query 213073 GCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACT 213132 | || ||||| ||||| | || | ||| || ||| | |||||||| ||| ||| Sbjct 28036 GGTCAGCCCAATCCCA----CAAGTC-GGTGG--GTACTTTA--TTCCACATATCATACT 28086 Query 213133 GCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 | | || |||||||| || ||||| || | || | ||||| |||| | || | Sbjct 28087 GAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTTCATAGGGACCATCTTTCTCAG 28146 Query 213193 CCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA 213252 |||| || || |||| || |||| | ||||| || ||||| || || | | || | Sbjct 28147 CCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTGTTTCGAAAATTTGCTGATTAA 28206 Query 213253 GCTTCTTGGCCTCTGGGGACGTGAA---GGGCATC--ATCATGCGTTGGAACACATCAGC 213307 |||| | ||||| | || | | ||| | | |||| | || ||||| Sbjct 28207 GCTTGTAGGCCTGTTC--ACTTTCATAGGGGTAACGCATCAGAATTAGGGTG---TCAGC 28261 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTC 213367 | || || || || || || ||||| | ||||||| || ||||| ||| Sbjct 28262 GAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATTGGACTTTCTTGCTTCCGG 28321 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 ||| || || ||||| ||| ||||| || ||||| ||||| || | || |||| || Sbjct 28322 CAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGCGCGTAACAACCTTGGCCAC 28381 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG----CACAAAC----TCA 213479 || || | || | || | |||| | | ||| ||||||| | | Sbjct 28382 ATTCTTCAATTTCTTGAAATC--ATACGT-----CTTTTCTGGAGTCACAAACATATTGA 28434 Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 | || ||| ||||| || ||||| || | || | || | | |||||| | Sbjct 28435 GACAAATCGA----GGCCAAATTACAAACTGCAATTTCATCAGGTGCCGAGTACTCAACA 28490 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGC 213598 || || || |||| ||||||||| ||| ||||| | || || || || ||| |||| Sbjct 28491 ATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATT--ACTCTTGC 28548 Query 213599 GTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTA 213657 | | ||| | || ||| | ||||| || |||| || || || | |||| | | | Sbjct 28549 GATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTCGATGA 28608 Query 213658 TCTGGCT--CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCT 213714 | ||| ||| || |||| || || || || || | || | | | Sbjct 28609 T--GGCAAACCATAGCG-CCTGCGCTTTTACGGTCCTATTGGCTTTGCCTTCCTTT---T 28662 Query 213715 CGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC--CCTGTCCAGTCCCGGACA 213772 |||| | |||||| || | | ||||||| ||||| || | ||| || |||||||| Sbjct 28663 CGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGT--AGCCCCGGACA 28720 Query 213773 GGATGCG-GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGT 213831 || | |||||||| || |||||| || | ||| ||| | || ||| ||||| | Sbjct 28721 TT-TGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGAT 28779 Query 213832 CCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTT 213891 | || | ||| || ||| ||| || || |||| | ||| ||| || | ||||| Sbjct 28780 CGGGAATCCAAAGGGCGTAGAAAAGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTTTT 28839 Query 213892 TGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGG 213951 | | ||| | ||| ||||| || |||| ||||| || |||| ||||||||||| | Sbjct 28840 TCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAATG 28899 Query 213952 CGCCCGGCCTCTTGCCGCC 213970 |||| || | |||||||| Sbjct 28900 CGCCAGGACGTTTGCCGCC 28918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931294246094080