Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10186 138 2e-27 seq10162 87.8 3e-12 >seq10186 Length=270785 Score = 138 bits (152), Expect = 2e-27 Identities = 299/444 (67%), Gaps = 5/444 (1%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 || |||||||| | |||||||| ||||| || || | | | |||||| ||||||| Sbjct 28491 ATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACTCTTGCGA 28550 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| |||||| ||| | |||||| | || || || |||| || || | | || Sbjct 28551 TTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTCGATGATG 28610 Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 ||| || | ||| || | || ||||| ||| || || || |||||| || Sbjct 28611 GCAAACCATAGCGC-CTGCGCTTTTACGGTCCTATTGGCTTTGCCTTC---CTTTTCGTA 28666 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 || || | ||||| | || || || | || | || || ||||| || Sbjct 28667 TTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGACATTTGTG 28726 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 |||||||| || ||||| || |||| ||| | || ||| || || || || || Sbjct 28727 TGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGATCGGGAAT 28786 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| || || | || |||||||||| || ||||| ||| ||| |||||||| | | Sbjct 28787 CCAAAGGGCGTAGAAAAGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTTTTTCTTTAA 28846 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 |||||||||||||||||| || | ||||| || |||| ||||| ||| | ||||| || Sbjct 28847 ATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAATGCGCCAGG 28906 Query 222178 TCGCTTGTTGCCACCCTGATCCAC 222201 || ||| |||||| ||||| || Sbjct 28907 ACGTTTGCCGCCACCTTGATCGAC 28930 >seq10162 Length=1180275 Score = 87.8 bits (96), Expect = 3e-12 Identities = 240/358 (67%), Gaps = 16/358 (4%) Strand=Plus/Minus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| || || || |||||||||||||| || || || ||| | || | ||| | Sbjct 72057 TGGCCTTTTTCGCCGCCTCTGATGGTATTGTCAATGAAAATTTAGTTGAACGTTTCTCGC 71998 Query 25661 GGGAAGTGC-AGT-ACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 || |||| ||| || || ||| || ||||| || ||||| || ||||| ||||| Sbjct 71997 AAGAGGTGCAAGTGAC--AGAAGCCCGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAA 71940 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGA 25775 ||| ||||| || ||||| | ||||||| || ||||||| ||| || | Sbjct 71939 TGTTCACTCCGAAATGTAT---AGTATTCTGATCGATACATACATTAAGGACCGCGATCA 71883 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAG-CATCAAGAGGAAGGCGCGGT 25834 | || || || |||||| || ||| |||| | | |||| |||||| | Sbjct 71882 ACGTGAATATCTTTTCAATGCCATTGA-AACAATGCCAGCCGTTAAGAAGAAGGCCGATT 71824 Query 25835 GGGCCATGAAGTGGA--TCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| || |||| ||| ||| | |||| ||||| || || | | || || Sbjct 71823 GGGCCTTGTCATGGATTTCATCAG--AATCGGCTAATTTTGGAGAACGTGTTATTGCGTT 71766 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 |||||| || ||||| || |||||||||||| ||||| ||||||| ||||| ||| Sbjct 71765 TGCTGCCGTTGAGGGTATATTTTTCAGCGGTAGTTTTGCCTCCATCTTTTGGCTTAAG 71708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928606934457280