Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq9576 95.1 1e-14 seq9744 89.7 4e-13 seq7037 89.7 4e-13 >seq9576 Length=1569244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| || || || ||||| || ||| ||| |||||||| Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || ||| ||||| || || | || ||||||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | ||||| || ||||| || ||||||||| | || || | || || ||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||||||||||||| |||| |||| || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTT 196321 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||||| || || || ||||| || ||| |||||||| Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | |||| || |||| || ||||| || || | || |||||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 195772 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | ||||| || ||||| || ||||||||| | || || | || || || Sbjct 195773 ACAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 195832 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| || |||||||||||| |||| ||||||| Sbjct 195833 CATCCAGAAAGAATCTACTTTGCATTTGGTATT 195865 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||| || || || || ||||| || ||| ||| |||||||| Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | |||| || |||| || ||||| || || | || |||||| Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 196000 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || ||||| || ||||||||| | || || | || ||||| Sbjct 196001 ACAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAA 196060 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || |||||||||||| |||| |||| || | | || ||||| || Sbjct 196061 CATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGGTAT 196111 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||| || | || || |||||||| || ||| |||||||| Sbjct 196338 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTTGAACCTTCC 196397 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| ||||| ||||| || || | || |||||| Sbjct 196398 GATACTATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 196457 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||| || ||||| || ||||||||| | || || | || |||||| Sbjct 196458 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196517 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||||||| |||| |||| || | | || ||||| || Sbjct 196518 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGGTAT 196567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || || || || ||||| || |||||||||||| || ||| ||| Sbjct 195423 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCT 195482 Query 28611 TCAGAGACGGTGGCCGA-TCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | | | |||| |||| || |||||||| || | || ||| Sbjct 195483 TCAGATACTATTGAAAACGTTAAAGCTAAAATTC-AGGACAAAGAAGGCATTCCTCCAGA 195541 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGAT 28727 ||||| ||||| |||||||| || || || | |||||| | | | ||| | ||| Sbjct 195542 CCAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTAT--CAGAT 195599 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || |||||||| || || || |||| | | || ||||||| || Sbjct 195600 TATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGGTAT 195655 >seq9744 Length=475756 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || || || |||||||| |||||| ||| || || || Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || ||||| |||||| || || || || | ||| ||| || Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | || || || ||||||||||| |||||| || || ||||||| || Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||| ||||| || || || Sbjct 177560 TATTCAAAAGGAATCGACCCTACA 177537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || || || |||||||| |||||| ||| || ||||| Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || ||||| |||||| || || || || | ||| ||| || Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || || || ||||||||||| |||||| || | ||||||| || Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || ||| |||| |||| || | | || ||||| || Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGGAAT 178535 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || || || |||||||| |||||| ||| || || || Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || ||||| ||||||| || || || || | ||| ||| || Sbjct 179389 AGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 179330 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || || || ||||||||||| |||||| || | | ||||| || Sbjct 179329 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAA 179270 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || ||| |||| |||| Sbjct 179269 TATTCAAAAGGAGTCAACTTTGCATTTGGT 179240 >seq7037 Length=35088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| |||||||| || || | ||||| || || || ||| || || || Sbjct 23142 AAGATGCAGATATTTGTTAAGACCCTTACGGGCAAGACTATAACCCTAGAGGTTGAGCCA 23083 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || |||| || || | || |||||||||||| | || || Sbjct 23082 TCTGACACTATCGAAAATGTCAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCGGA 23024 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| || | || ||||| || ||||||||||||||| ||| || | ||||| Sbjct 23023 TCAACAACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGATTA 22964 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| || || |||||| |||| |||| | | ||||| ||||| Sbjct 22963 TAATATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTTTACGTGGAGG 22913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425298582669573