Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq10993 129 7e-25 >seq10993 Length=153489 Score = 129 bits (142), Expect = 7e-25 Identities = 347/523 (66%), Gaps = 22/523 (4%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| | ||||||||| ||||| ||||| ||||||||||| ||||| || Sbjct 65514 ACACCAATGGGACCCATGCCAGGACCACCACCACCATGAGGAATACAGAAAGTCTTGTGC 65573 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| | ||| | ||||| ||||| |||| || ||||| ||||| ||| Sbjct 65574 AGATTCAAATGGGACACATCACTGCCATAATCACCGGGGCGGCAAAGACCCACCTGGGCA 65633 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGA-TCT-TACATA 138360 || | || |||||||| | ||| ||||||||||||| | || | | || | ||| Sbjct 65634 TTCATGTTGGCACCATCCAAATAAACCTGACCACCATATTTGTGTATAAGGCTGCAGATA 65693 Query 138361 TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420 || | | | | | ||||||| ||||| ||| || ||||| || ||||||| ||||| Sbjct 65694 TCGGCC--ACGGTACTTTCAAACACACCCATAGTTGAGGGATAGGTGATCATAAGACATG 65751 Query 138421 AGAGTTCAAATGTATTCATGAT----TGCTTTCTTCTCTAGATCTTTGATGTCTATGTTG 138476 | | || ||| |||| | ||| || | || |||| ||||| || || Sbjct 65752 ACA----AATTGTTGGCATGCTCCGCTGCCTTATCCTTCAGATGGGCCATGTCAATACTG 65807 Query 138477 CCATC----ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGC 138532 ||||| | || | | | | |||||||||| || ||||| ||| || Sbjct 65808 CCATCGCTAAGAATGCGAATGG----GTTCAACTTTCATGCCAGCCATTTGTGCCGAGGC 65863 Query 138533 AGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTG 138591 |||||| || ||||| || || || || ||||| | ||| | | | | || | | Sbjct 65864 AGGATTGGTGCCATGAGCCGAAATGGGAATAAGACAGATATTGCGATGACCCTCATTGCG 65923 Query 138592 ATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGT 138651 | | | ||| |||| | || || || || ||||| || ||||| | ||| | || Sbjct 65924 TTGC-TCATGGTATGAACGAATGGCCCTCAAACCAGCATATTCTCCCTGGGCTCCCGAGT 65982 Query 138652 TAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAA 138694 | ||||| || || || |||| |||| || || ||||| || Sbjct 65983 TGGGTTGGAAAGAGATTTTATCATAACCCGTAATTTCACACAA 66025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578850125747240