Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10186 224 1e-53 seq9983 102 1e-16 seq18266 96.9 4e-15 >seq10186 Length=270785 Score = 224 bits (248), Expect = 1e-53 Identities = 1041/1630 (64%), Gaps = 34/1630 (2%) Strand=Plus/Minus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| ||||||| || || | ||||| || || |||||||||||| ||| | | |||| Sbjct 29280 ACATGCTCATGCGTGTGGCTGTGGGCATACATGGTGAAGACATTGATGCTGCCATCGAGA 29221 Query 75279 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 75338 | ||| || | | || || || || | ||| || | ||||| || || ||||| Sbjct 29220 CTTACAACTTGCTTTCGGAACGTTACTTTACTCATGCTTCTCCAACTCTATTTGCTGCTG 29161 Query 75339 GTACACCAAGA--CCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 75396 |||||| || ||| |||| ||| ||||| | ||| || || || || Sbjct 29160 C--CACCAATCTCCCCCAGCTGTCGTCTTGTTTCCTCCTGACCATGGTGGCTGATTCGAT 29103 Query 75397 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGT 75454 | ||||| | || ||| | | |||||| | || || || | ||| || || Sbjct 29102 TGAAGGTATTTTC--AAGTCTGTTGAACAGTGCGCCATGATATCGAAATCGGCCGGAGGA 29045 Query 75455 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 75514 ||||| || | ||||| | | | ||||| | || |||| || || ||||| Sbjct 29044 ATTGGCATCAATGTCCATTGTATACGCGCCAAGGGAACTTCTATTGCCGGCACTAATGGC 28985 Query 75515 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 75574 ||| ||||| | | || ||| | | ||||| ||| || || ||||| || Sbjct 28984 ACATCCAATGGTTTAGTGCCCATGTTAAGGGTATTCAACAATGTTGCACGTTATGTCGAT 28925 Query 75575 CAAGCGGGGCGTCGCAAGG---GGTCCATC-GCGGTCTACTTGGAACCATGGCATGCCGA 75630 |||| | |||| | | | || ||| || |||| ||||||||||||||| | || Sbjct 28924 CAAG-GTGGCGGCAAACGTCCTGGCGCATTTGCCATCTATTTGGAACCATGGCATTCGGA 28866 Query 75631 TATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGA 75690 ||| | ||||| | || ||| ||| ||| | |||||| ||| ||||| Sbjct 28865 TATTTTTGAGTTTTTGGATTTAAAGAAAAACACAGGCAAGGAAGAGCATCGTGCCAGAGA 28806 Query 75691 TCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCA 75750 ||| || | |||| |||||||| || || || |||||||| || || ||| ||| | Sbjct 28805 TCTTTTCTACGCCCTTTGGATTCCCGATCTGTTTATGAAGCGTGTCGAAGAGAATGGCGA 28746 Query 75751 ATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTT 75810 ||||| || | |||||| |||| || || || || | | ||| || || || Sbjct 28745 CTGGTCGCTAATGTGTCCACACAAATGTCCGGGGCTACAAGATGTGTGGGGAGACGAATT 28686 Query 75811 TGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGC 75870 |||| || ||| ||| || ||| |||| || | ||||||| ||| ||| || ||| Sbjct 28685 TGAAAAACTTTACGAAAAATACGAAAAGGAAGGCAAAGCCAATAGGACCGTAAAAG-CGC 28627 Query 75871 CGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTT 75929 | | | ||| || || || || | || ||| || ||||| || |||||||| | Sbjct 28626 AGGCGCTATGGTTTGCCATCATCGAAGCCCAAGTGGAAACAGGAACCCCTTATATGCTGT 28567 Query 75930 ACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAA 75989 ||| || ||||| || |||||||| ||| | ||| | || || ||||| || | Sbjct 28566 TCAAAGACGCTTGCAATCGCAAGAGTAATCAACAAAATATTGGCACGATCAAATGCAGCA 28507 Query 75990 ATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGG 76049 || | || || |||||| | |||||| | | ||||| | || ||||| ||||||| Sbjct 28506 ATTTGTGTACAGAAATTGTTGAGTACTCGGCACCTGATGAAATTGCAGTTTGTAATTTGG 28447 Query 76050 CATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAAC 76109 | || || || | || ||| | | ||| | || | ||||| | || || Sbjct 28446 CCTCGATTTGTCTCAATATGTTTGTGACTCCAGAAA---AGACGTATGATT-TCAAGAAA 28391 Query 76110 TTCATGAA-ATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTT 76168 || | ||| | | ||| ||||||| ||||| || | ||||||||| || | Sbjct 28390 TTGAAGAATGTGGCCAAGGTTGTTACGCGCAATCTCAATAAAATCATTGACATCAACTAC 28331 Query 76169 TATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTT 76228 ||||| | | || ||||||| |||||| |||| | || |||||| | ||||| Sbjct 28330 TATCCATTGCCGGAAGCAAGAAAGTCCAATATGAGACATCGTCCCATTGGTATTGGTGTA 28271 Query 76229 CAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAG 76288 |||||| |||| || | ||| || || ||| | | ||| || | ||| | Sbjct 28270 CAAGGTTTCGCTGACACCCTAATTCTGATGCGTTACCCCTATGAAAGTGAACAGGCCTAC 28211 Query 76289 GAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAA 76348 || | ||| | || || ||||| || || | | || ||||||| ||||||||| Sbjct 28210 AAGCTTAATCAGCAAATTTTCGAAACAATTTACTATGGTGCCTTGGAGGCCAGTTGTGAA 28151 Query 76349 TTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTG 76408 ||||||| | ||| ||||||| |||| | ||| || | | |||| | Sbjct 28150 CTGGCTGAGAAAGATGGTCCCTATGAAACATATCCCGGTAGCCCTGTAAGCAAAGGTATT 28091 Query 76409 CTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCTCAAG 76468 ||||||| |||||||||| | | | ||| | | || |||| || || ||| Sbjct 28090 CTTCAGTATGATATGTGGAATAAAGTACCCACCGACTTGTGGGATTGGGCTGACCTAAAG 28031 Query 76469 GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAG 76526 | || || | ||| | || ||| || || | | ||||||||||| || | Sbjct 28030 GCCAAAATTGCCAAGCATGGTGTGCGCAAC--TCATTGCTCTTAGCACCAATGCCTACTG 27973 Query 76527 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCT 76586 | || || || || || ||||||||||||||| ||||| || |||||| | || || | Sbjct 27972 CTTCTACAGCCCAGATTATGGGTAATAATGAATCATTTGAGCCCTACACATCGAATATTT 27913 Query 76587 ACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACC 76646 || | | ||| ||||||| ||| |||||||| | || | |||| || Sbjct 27912 ACACACGTCGTGTACTCTCAGGTGAATTTAATATTGTCAATCACCATTTGCTCAAGGATT 27853 Query 76647 TCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGAT---CTCATGGTGAAAGCGGGTG 76703 | | | ||| | | ||| | ||||||||| || |||| | ||| ||| Sbjct 27852 TGACCGAACTTGATTTGTGGGATGAAGATATGAAGAATAAGATCAT--TTCTAGC-CGTG 27796 Query 76704 GTTCCATTCAAAATAT--CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGT 76761 | || || |||||||| ||||| ||||| | || ||| | || ||| || || Sbjct 27795 GCTCTATACAAAATATTGAACAGAT-TCCCA-AAGAGATCCGAGAGCTTTACAAAACCGT 27738 Query 76762 GTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGA 76821 |||||||| | || ||| | |||||||| |||||||| |||||| || Sbjct 27737 TTGGGAAATTTCCGTCAAGACAACCATCAAAATGGCCGCCGATCGTGGGGCCTTCATCGA 27678 Query 76822 TCAAAGTCAA 76831 ||| |||||| Sbjct 27677 TCAGAGTCAA 27668 >seq9983 Length=370597 Score = 102 bits (112), Expect = 1e-16 Identities = 273/409 (67%), Gaps = 14/409 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| || || ||| ||||||| | || | || || || ||||| || || | Sbjct 243875 GGTGCTAAAATTCCCAAAGGCGCCATGCTGACTGGACCACCCGGCACGGGTAAAACTATG 243816 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 | ||| || | || |||||| | ||||| || |||||| | || ||||| | || | Sbjct 243815 TTGGCCAAGGCTACTGCCGGTGAAGCCAATGTGCCTTTCATC-ACTGTCTCTGGCTCAGA 243757 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||| ||||||||||||| ||||| ||| | | | || |||||| | |||| || || Sbjct 243756 GTTTTTGGAGATGTTTGTGGGTGTTGGTCCATCACGTGTCCGCGATATGTTTGCCATGGC 243697 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 ||| ||||| || || ||| | ||||| ||||| |||||||| || || |||| Sbjct 243696 CCGTAAAAATGCCCCCTGCATTCTGTTCATCGATGAAATTGATGCCGTTGGTCGTAAACG 243637 Query 175515 CAG-CGCTGGTGGTATGCCAGCAA--ATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | || || | || || | ||| || |||||| ||| | |||||| | || Sbjct 243636 TGGTGGCAAGTCCTTTGGTGGCCACTCTGAACAG-GAGAAC--ACATTGAATCAATTGCT 243580 Query 175572 CACCGAGATGGATGGCTTTGACAATGAGACTGGCA---TTGTGGTTATTGCGGCCACTAA 175628 || |||||||| || |||| || || |||| || | || || || || Sbjct 243579 GGTTGAAATGGATGGTTT---CAATACCACCACCAACGTTGTAGTGCTGGCCGCTACAAA 243523 Query 175629 TCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 ||| || ||||| || ||| | ||||| | || || |||||||| ||| Sbjct 243522 TCGTGTAGATATTCTGGATAAAGCCCTTTTACGTCCCGGTCGTTTCGAT 243474 >seq18266 Length=950389 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 13541 TCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCT 13600 || ||||| | ||||| ||||||||||| || || ||| | || || ||| | | || Sbjct 752792 TCAAAAATCAAGGGTATACCCAAGTTGGAGGATGCCAACGAAGCTGGCACGAAAAATTCC 752851 Query 13601 GGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGT 13660 | ||||||||| ||| |||| |||||||| || || ||| | || || || | ||| Sbjct 752852 TACATGTGTACTCTAATTCTCACTGAGGGTGACTCAGCCAAATCTCTGGCTGTGTCTGGT 752911 Query 13661 CTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAAT 13720 || ||| |||||||| || || ||||| || ||| | || ||||||| |||| Sbjct 752912 CTTGGTGTTATTGGTCGTAATTTTTATGGTGTATTTCCATTGCGTGGTAAATTGTTGAAT 752971 Query 13721 GTTCGGGACGC 13731 ||||| || || Sbjct 752972 GTTCGTGAGGC 752982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596416825982560