Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7037 168 1e-36 seq9744 147 4e-30 seq9576 132 9e-26 >seq7037 Length=35088 Score = 168 bits (186), Expect = 1e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 193143 AATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTA 193202 || || || |||| |||||| |||| ||| || ||||||||| || || || |||| Sbjct 22922 AAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGG 22981 Query 193203 GAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCT 193262 ||| || ||||||||||||||||||||||||| |||||||| || || ||||| ||| Sbjct 22982 CCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCT 23041 Query 193263 TTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTT 193322 || || || || |||| ||| | |||| ||||| || || | |||||| ||||| ||| Sbjct 23042 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACCTCTAGGGTT 23101 Query 193323 ATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || || |||||||| ||||| || Sbjct 23102 ATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCATCTT 23142 >seq9744 Length=475756 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| |||||| || | ||| || |||||| || |||||||| || | | Sbjct 178550 CGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCA 178609 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| || || ||||| || | ||| || || || || || ||||| ||| Sbjct 178610 TCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 178669 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | |||| ||| ||||| |||| ||| ||||| | || ||| Sbjct 178670 TCTTGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATA 178729 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||||| | || || || || ||||||||| Sbjct 178730 GTTTTACCTGTCAAAGTCTTAACGAAAATTTGCATT 178765 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||| ||||| | || | || || |||||| || ||||| || || | | Sbjct 177525 CGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCA 177584 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| || || ||||| || | |||||| || || || || ||||| ||| Sbjct 177585 TCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTA 177644 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | |||| || ||||| || | ||||||||| | || ||| Sbjct 177645 TCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATA 177704 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||||| | || || || || ||||||||| Sbjct 177705 GTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 177740 Score = 132 bits (146), Expect = 9e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| |||||| || | ||| || |||||| Sbjct 179212 AATTTGCATTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATT 179271 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || ||||| || | ||| ||||||||||| || || ||||| || | ||| || Sbjct 179272 GTAATCAGATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTG 179331 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| |||||||| ||||| | || | |||| || ||||| || Sbjct 179332 GTCTGGGGGAATACCTTCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGA 179391 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| | || |||||||||||||| | || || || || ||||||||| Sbjct 179392 TGGCTCTACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 179449 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| |||||| || | ||| || ||| || Sbjct 179440 AATTTGCATTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTT 179499 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || ||||| || | | ||| || |||||||||||||| |||||||| | |||||| Sbjct 179500 GTAATCAGATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTG 179559 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || || || ||||| | ||||| |||| ||| ||||| || Sbjct 179560 GTCTGGAGGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGA 179619 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || | || || || || || || | || || || || || |||||||| Sbjct 179620 AGGTTCCACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 127 bits (140), Expect = 4e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| ||||| || | || || |||||| Sbjct 178756 AATTTGCATTCCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATT 178815 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||||||| || | ||| |||||||||||||| || ||||| || | ||| || Sbjct 178816 GTAATCGGATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTG 178875 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| |||||||| ||||||| || | |||| || ||||| || Sbjct 178876 GTCTGGGGGAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGA 178935 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| | ||| || || || || || | ||||| || || ||||||||| Sbjct 178936 TGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATT 178993 Score = 127 bits (140), Expect = 4e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| |||||| || | ||| || |||||| Sbjct 178984 AATTTGCATTCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATT 179043 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||||||| || | | ||| |||| ||||| || || ||||| || | ||| || Sbjct 179044 GTAATCGGATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTG 179103 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||||||||| || ||||||| || | |||| || ||||| || Sbjct 179104 GTCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGA 179163 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| | ||| || || || || || | || || || || ||||||||| Sbjct 179164 TGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || | || ||||||| |||||||| ||||||| || | |||| ||| || Sbjct 177958 CTGCTGGTCTGAGGGAATTCCTTGCTTATCTTGGATTTTGGCCTTAACATTTTCAATGGT 178017 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| ||| ||||| | ||| || || || ||||| | || || || |||||||| Sbjct 178018 ATCTGAAGGCTCCACTTCCAAAGTGATCGTCTTTCCTGTCAATGTCTTAACGAATATTTG 178077 Query 193358 CATT 193361 |||| Sbjct 178078 CATT 178081 >seq9576 Length=1569244 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || | |||| |||||| |||| ||||| || || Sbjct 196345 ATTTGCATACCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTG 196286 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | | ||| || || || || ||||| || || || | |||||| Sbjct 196285 TAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGA 196226 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || || || || |||| || | ||| ||||||||||||| Sbjct 196225 TCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAA 196166 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| | || |||||||| || || | |||||||| || |||||||| Sbjct 196165 GGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | || || | |||| |||||| |||| ||||| || ||| Sbjct 196573 ATTTGCATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTA 196514 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | | ||| || || || || ||||| || || || | ||| ||| Sbjct 196513 TAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGA 196454 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| ||||| | || | ||| ||||||||||||| Sbjct 196453 TCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAA 196394 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| | || || ||||| || || || || ||||| || |||||||| Sbjct 196393 GGTTCAACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | ||||| || || || ||||||||||| | ||| | Sbjct 196780 CGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCG 196721 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || |||||||| || | |||||||| ||||| || ||||| || Sbjct 196720 TCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 196661 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | ||| || || || |||| || ||||| | || || Sbjct 196660 TCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATG 196601 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || |||||||| Sbjct 196600 GTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899424009753840