Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9576 161 1e-34 seq10162 118 2e-21 seq9744 113 7e-20 seq7037 95.1 2e-14 >seq9576 Length=1569244 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| || || | || || || ||||| ||||| ||||| || || || || Sbjct 195420 AACAAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAG 195479 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| |||| |||||| ||| |||||| || || ||||||||||| |||||| Sbjct 195480 CCTTCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCA 195539 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||||||| | || | ||| ||||||||||| |||||| | || ||||||||| Sbjct 195540 GACCAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTATCAGAT 195599 Query 155997 TATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 |||||||| ||||| | || |||||||| || | | ||||||| ||| Sbjct 195600 TATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGGT 195653 Score = 129 bits (142), Expect = 9e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||||||||||||||| || || ||||| ||||| ||| ||| Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| |||||| ||||| || ||||| || |||||||| ||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | ||||| |||||| | |||||| Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGAT 195809 >seq10162 Length=1180275 Score = 118 bits (130), Expect = 2e-21 Identities = 533/836 (64%), Gaps = 15/836 (2%) Strand=Plus/Plus Query 17863 TTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 ||||| |||||| || ||||| || ||||||||||| || || |||||||| || | Sbjct 71336 TTTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCAT 71395 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATT-AATTCGTATA 17981 | ||| || || ||||| |||| || || ||||| | || ||||| | Sbjct 71396 TTCCATGAAGGGGAAAGGATTTTTGGTATTGTAG-ATTTTGCCAACATCCAATTCAACCA 71454 Query 17982 ATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTA 18041 | | ||| || |||||||| | ||||| ||||| || || |||||||| || | || Sbjct 71455 GCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTA 71514 Query 18042 GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 | | || ||||| ||| | | ||||| | || || | |||| ||| || | Sbjct 71515 AATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGA 71574 Query 18102 TGTTTATTACCCTAGATTT--TGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 | | || | | ||| ||| ||| | | | | ||| || || | | Sbjct 71575 TTTCAATAATACGTTCTTTGCTGGG--TTTCTGCACCAGAT-ATTTGAACATCAGTACG- 71630 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 ||||||||| || || ||||| || | || || ||||| || || || || || Sbjct 71631 -GCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCC 71689 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 ||||||| ||| | ||| || |||||||| || || || ||||||| || ||||| Sbjct 71690 AGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATAT 71749 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTATTGCTCAGTA 18338 |||||||||| || ||||| || | | ||| ||||| | | | || | | | Sbjct 71750 ACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATGAA-A 71808 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||||| ||||| || | | | || || | || || ||||| | Sbjct 71809 TCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGA 71868 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | | || || || | | || || || || || ||||| | | | |||||||| Sbjct 71869 AAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATTT 71928 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 | || || | ||||||| || || || || | ||| || | | || || | || Sbjct 71929 CGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTT 71988 Query 18519 GAATCTC--GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 | | ||| || | ||| | ||| || ||||| ||||| || ||||| |||| | || Sbjct 71989 GCACCTCTTGCGAGAAA--CGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGC 72046 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636 |||||| |||| ||||| ||||||| |||||| || | | | | ||| || Sbjct 72047 GAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATC 72106 Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | || ||||| || ||||||||||||||| ||||||||| || | || |||| Sbjct 72107 AGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 >seq9744 Length=475756 Score = 113 bits (124), Expect = 7e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || ||||| || ||||||||||| || ||||| || ||| Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || || || || | |||||| | | || ||||| ||||| || Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| ||| | || | ||||| || Sbjct 178585 TAT-TCAAAAGGAGTCAACTTTGCATTTGGT 178556 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || ||||||||||||||||||| || || || || ||||| || || Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || || || || | |||||| | | || ||||| ||||| || Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 156002 TAT 156004 ||| Sbjct 178813 TAT 178811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||||||||| || || || || ||||| || || Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 179162 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || ||||| || ||||||||||| || || ||||| || Sbjct 179161 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACCA 179102 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || || || ||||| |||||| | || ||||| ||||| || Sbjct 179101 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTACAA 179042 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| ||| | || | ||||| || Sbjct 179041 TAT-TCAAAAGGAGTCAACTTTGCATTTGGT 179012 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| || ||||||||||| || ||||| || || Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || ||||| |||||||| ||||| || || ||||| || Sbjct 179389 AGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 179330 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || || || || | |||||| | | || ||||| ||||| || Sbjct 179329 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAA 179270 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| ||| | || | ||||| || Sbjct 179269 TAT-TCAAAAGGAGTCAACTTTGCATTTGGT 179240 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||||||||| || || || || ||||| || ||| Sbjct 178309 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCTTC 178250 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || || ||||| || ||||| ||||| || || ||||| || Sbjct 178249 GGATACAATTGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGAATTCCCCCAGACCA 178190 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || || || ||||| |||||| | || ||||| ||||| || Sbjct 178189 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCTGATTACAA 178130 Query 156002 TAT 156004 || Sbjct 178129 CAT 178127 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| || ||||||||||| || ||||| || || Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || ||||| || ||||| ||||| || || ||||| || Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||||| || || || || | |||||| | | || || || ||||| || Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 156002 TATATCCAAA-GAGGCGACGCTTCAT 156026 ||| || ||| || |||| || ||| Sbjct 177560 TAT-TCAAAAGGAATCGACCCTACAT 177536 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||||||||| || || || || ||||| || || Sbjct 178537 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCCTC 178478 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || || || || |||||||| ||||| || || || || || Sbjct 178477 AGATACCATAGAAAATGTTAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCTGACCA 178418 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||||| || || || ||||| |||||| | || || || ||||||| Sbjct 178417 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACGTTGTCGGATTATA- 178359 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| ||| | || | ||||| || Sbjct 178358 -ATATCCAAAAGGAGTCAACTTTGCATTTGGT 178328 >seq7037 Length=35088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| |||||| |||| || | || || || ||||| || |||| || || Sbjct 23142 AAGATGCAGATATTTGTTAAGACCCTTACGGGCAAGACTATAACCCTAGAGGTTGAGCCA 23083 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| ||| || ||| || || || || ||||| || || || || || Sbjct 23082 TCTGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCGGAT 23023 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| |||| |||| |||||| || || | |||||| | |||| || || |||||| Sbjct 23022 CAACAACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGATTAT 22963 Query 156000 AATAT 156004 ||||| Sbjct 22962 AATAT 22958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731684576729200