Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9576 165 2e-35 seq10162 158 2e-33 seq7037 149 1e-30 seq9744 141 2e-28 seq10951 120 6e-22 >seq9576 Length=1569244 Score = 165 bits (182), Expect = 2e-35 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| ||||| | || ||||| | || | ||||| |||||||||||| Sbjct 195655 ATACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCT 195596 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| ||| |||| || | || |||||||||||||||| ||| ||||| || || Sbjct 195595 GATAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGA 195536 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || |||||| ||| || || |||| |||||| | || Sbjct 195535 GGAATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCC 195476 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || | ||||||||||| |||||||| || || | || ||||||||||| || Sbjct 195475 ACCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGTT 195420 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || ||||| | |||| || || ||| ||||| || || Sbjct 196792 CCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAA 196733 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || ||| | || ||||||||||| |||||||| || || | |||||||| || || Sbjct 196732 AGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 196673 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || ||||| ||||| || || || || | || || | ||||||| Sbjct 196672 ATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACT 196613 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || |||||||| ||||| | || || | || || ||||| Sbjct 196612 TCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 >seq10162 Length=1180275 Score = 158 bits (174), Expect = 2e-33 Identities = 495/764 (65%), Gaps = 33/764 (4%) Strand=Plus/Plus Query 49602 AATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAATAATCTATCGGC 49660 || |||||||||||||| || ||||| | ||| ||| || | | | |||||| Sbjct 71409 AAAGGATTTTTGGTATTGTAG-ATTTTGCCAACATCCAATTCAACCAGCAGACGATCGGC 71467 Query 49661 TACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAATGGTAA 49720 |||||||||| ||||| |||||||||||||||||||| || | ||| ||| |||| | Sbjct 71468 AACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAAATTACATGGCAG 71527 Query 49721 TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataattatatt 49780 || ||| | ||||| | ||| |||| |||||| | | || || ||| ||| Sbjct 71528 AGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGATTTCAATAATACG 71587 Query 49781 attttttgataatttatatttaatatgattcgcatatattaaACAT-------GCAAAAT 49833 || |||| | || | || | |||| || ||||| ||||||| Sbjct 71588 -TTCTTTGCTGGGTT--------TCTGCACCAGATAT-TTGAACATCAGTACGGCAAAAT 71637 Query 49834 CAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 49893 || ||| || || ||||| | || || |||||||| || || || || ||||||| Sbjct 71638 CACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCAGGCATTA 71697 Query 49894 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGA 49953 || | || ||||||||||| || || |||||||||| || ||||||||||| | Sbjct 71698 GACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATATACCCTCAA 71757 Query 49954 CACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT---ATCCAAT 50010 | ||||| || || | | | ||||||| |||| || ||| || ||||| Sbjct 71758 CGGCAGCAAACGCAATAACACGTTCTCCAAA-ATTAGCCGAT--TCTGATGAAATCCATG 71814 Query 50011 TTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA--- 50067 | |||||||| || || || || | | || || |||| || || || || | Sbjct 71815 ACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGAAAAGAT 71874 Query 50068 ATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAG 50127 ||||| || || || | | | ||||||||| | Sbjct 71875 ATTCACGTTG---ATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATTTCGG 71931 Query 50128 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAA 50187 | || ||| |||||| || ||||| || ||| || | ||||||| || | Sbjct 71932 AGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTTGCA 71991 Query 50188 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 50247 | || |||| |||||||||||||| ||| |||||||||||||| || ||||| | Sbjct 71992 CCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGAAAA 72051 Query 50248 ATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA-GATTCA 50306 | || | ||| | || |||| |||||| ||| |||| | |||||| | | | Sbjct 72052 AGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCAGTTA 72111 Query 50307 AGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGC 50350 || || || || | ||| |||||||| | |||||||||||| || Sbjct 72112 AG-TCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGC 72154 >seq7037 Length=35088 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| ||||||| ||| || |||||||||||||| |||||||| |||| ||| Sbjct 22931 ACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCTTCC 22990 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 |||||||| || ||||| ||||||| |||||||| ||||| ||||| ||||| || || Sbjct 22991 AATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGA 23050 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || ||| ||||| |||| || || | || || ||||| || || || || Sbjct 23051 ATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGTCTTG 23110 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | || |||| |||||||||||| || Sbjct 23111 CCCGTAAGGGTCTTAACAAATATCTGCATCTT 23142 >seq9744 Length=475756 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | |||||| | || ||||| ||||| | ||| ||| || ||||| ||||| Sbjct 179219 ATTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGA-ATATTGTAATC 179277 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||| || || |||| || |||||||| ||||| || || || | ||| || || || Sbjct 179278 AGATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGG 179337 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| |||||||| ||||| || ||||| ||| | |||||| | || Sbjct 179338 GGGAATACCTTCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTC 179397 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||| | ||||| |||||||| || || || || | || || |||||| Sbjct 179398 TACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 179449 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | |||||||| || ||||| ||||| | ||| ||| || ||||| ||||| Sbjct 178991 ATTCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGA-ATATTGTAATC 179049 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| || || |||| || | ||||| ||||| || || || | ||| || || || Sbjct 179050 GGATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGG 179109 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||||||||| || ||||| || ||||| ||| | |||||| | || Sbjct 179110 GGGAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTC 179169 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| ||||| || ||||| || || || | || || |||||| Sbjct 179170 CACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 Score = 131 bits (144), Expect = 3e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||||| | || ||||| ||||| | ||| ||| || || || ||||| Sbjct 179447 ATTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGA-ATGTTGTAATC 179505 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||| || || |||| ||||||||||| || || || ||||| | |||||| || || Sbjct 179506 AGATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGG 179565 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || || || |||||| ||||||||| || | ||| || | ||| Sbjct 179566 AGGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTC 179625 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | ||||| || || || || || || || | || ||||||||||| Sbjct 179626 CACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||||| || ||||| ||||| | ||| || |||||||||||| Sbjct 178307 ATTCCTCCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCC 178366 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || | ||||| ||||| || || || | ||| || ||||| Sbjct 178367 GACAACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGG 178426 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || ||||| ||| | |||||| | || Sbjct 178427 GGAATACCTTCCTTATCTTGGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCC 178486 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| ||||| || ||||| || || || | || || |||||| Sbjct 178487 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178537 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||| || ||||| ||||| | ||| || || || |||||| Sbjct 178079 ATTCCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCA 178138 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| || | ||||| ||||| || || || | ||| || || || Sbjct 178139 GATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGG 178198 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || ||||| || ||||| || | ||| || | || Sbjct 178199 GGAATTCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCC 178258 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| ||||| || ||||| || || || | || || |||||| Sbjct 178259 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178309 >seq10951 Length=171266 Score = 120 bits (132), Expect = 6e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | ||| ||||| || || | || || ||| | Sbjct 139767 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGCAAGGTGGATTCCTTTTGGATGT 139826 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| |||||||||||||| || ||||| || | |||| Sbjct 139827 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTT 139886 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || ||||| || ||||| || ||| || ||||| || | || | Sbjct 139887 GATCTGGGGGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCGG 139946 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || || || | ||| ||||| ||||| || | || || | || |||||||||| Sbjct 139947 AAGGCTCGACCTCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATTT 140006 Query 192539 T 192539 | Sbjct 140007 T 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984221584152450