Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10162 176 8e-39 seq9576 156 8e-33 seq9744 138 2e-27 seq7037 134 2e-26 seq10951 96.9 6e-15 >seq10162 Length=1180275 Score = 176 bits (194), Expect = 8e-39 Identities = 536/828 (65%), Gaps = 13/828 (2%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 |||||||||||||| ||||| ||| || || |||||||| || || ||||| || | Sbjct 71335 ATTTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCA 71394 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATAT 38948 | ||| || || |||||||||||||| || ||||| | ||| ||| || Sbjct 71395 TTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAG-ATTTTGCCAACATCCAATTCAACC 71453 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 | | | |||||| |||||||||| ||||| ||||||||||||||||||| || | | Sbjct 71454 AGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATT 71513 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || ||| |||| | || ||| | ||||| | ||| |||| |||||| | | || Sbjct 71514 AAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATG 71573 Query 39069 atcataattatattattttttgat-aatttatatttaatatgattcgcatat-aGTAAAC 39126 || ||| ||| || |||| | ||| | | || ||| | | || |||| Sbjct 71574 ATTTCAATAATA-CGTTCTTTGCTGGGTTTCTGCACCAGAT-ATTTGAACATCAGTA--- 71628 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 |||||||| ||| || |||||||| | || || |||||||| || || || | Sbjct 71629 CGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGC 71688 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||||| || | || ||||||||||| || || |||||||||| || |||| Sbjct 71689 CAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATA 71748 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA-TCATCTAAA 39305 ||||||| || ||||| || || | | | ||||||| |||| | || | || Sbjct 71749 TACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAA-ATTAGCCGATTCTGATGAA 71807 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| | ||||||||| || || || || | | || || |||| || || || Sbjct 71808 ATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTG 71867 Query 39366 AATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATT 39425 || | | | | ||||||| Sbjct 71868 AAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATT 71927 Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 || || || ||| |||||| || ||||| || ||| || | ||||||| Sbjct 71928 TCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACT 71987 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 || || || |||| |||||||||||||| ||| |||||||||||||| || ||| Sbjct 71988 TGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCG 72047 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA-GA 39604 || || || | ||||| || |||| |||||| ||| |||| | |||||| | Sbjct 72048 AAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCA 72107 Query 39605 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGC 39652 | ||| || || || | ||| |||||||| | ||||||||| || || Sbjct 72108 GTTAAG-TCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGC 72154 >seq9576 Length=1569244 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| || || | || ||||| | || | ||||| |||||||||||| Sbjct 195655 ATACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCT 195596 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || || | || ||||||||||| |||| ||| |||||||| || Sbjct 195595 GATAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGA 195536 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || |||||| ||| || || ||||||||||| | || Sbjct 195535 GGAATGCCTTCTTTGTCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCC 195476 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || | ||||||||||| |||||||| || || | ||| ||||||||||| || Sbjct 195475 ACCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGTT 195420 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || || | | ||| |||| ||||||||||| ||||||||||| || | Sbjct 196747 ATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGT 196688 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || || ||||| || ||||| ||||| || || || || || Sbjct 196687 TGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTG 196628 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||||||||| | || |||||||| ||||| | || || | ||| || ||| Sbjct 196627 TCAGAAGGTTCTACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGC 196568 Query 172068 AT 172069 || Sbjct 196567 AT 196566 >seq9744 Length=475756 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| |||| || ||||| ||||| | ||| || |||||| ||||| Sbjct 178991 ATTCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCG 179050 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | ||||| ||||| ||||| || | ||| ||||| || Sbjct 179051 GATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGG 179110 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||| || ||||| || ||||| ||| |||||||| | || Sbjct 179111 GGAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCC 179170 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||| || ||||| || || || | ||| || |||||| Sbjct 179171 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| ||||| | ||| || ||| || ||||| Sbjct 179447 ATTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCA 179506 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||||||||| || || |||||||| | ||||||||| || Sbjct 179507 GATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGA 179566 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || |||||| ||||||||| || ||||| || | ||| Sbjct 179567 GGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCC 179626 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | ||||| || || || || || || || | ||| ||||||||||| Sbjct 179627 ACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| |||| || ||||| ||||| | ||| || ||||||||||| Sbjct 178307 ATTCCTCCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCC 178366 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | ||||| ||||| ||||| || | ||| |||||||| Sbjct 178367 GACAACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGG 178426 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || || ||||| ||| |||||||| | || Sbjct 178427 GGAATACCTTCCTTATCTTGGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCC 178486 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||| || ||||| || || || | ||| || |||||| Sbjct 178487 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178537 >seq7037 Length=35088 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| ||||||| ||| || |||||||||||| || || | ||| | || ||| Sbjct 22931 ACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCTTCC 22990 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||| || ||||||||||||| ||||| || ||||| ||||| ||||| || || Sbjct 22991 AATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGA 23050 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || ||| ||||| ||||| || || | || || ||||| || || || || Sbjct 23051 ATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACCTCTAGGGTTATAGTCTTG 23110 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | || |||| ||||||||||| || Sbjct 23111 CCCGTAAGGGTCTTAACAAATATCTGCATCTT 23142 >seq10951 Length=171266 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | ||| ||||| || || | || || || || || Sbjct 139772 ATGATACCACCACGAAGACGGAGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAG 139831 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||||||||| || || || || | ||||| || Sbjct 139832 TCGGACAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCT 139891 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||| || ||||| || ||| || ||||| || || || || | Sbjct 139892 GGGGGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGC 139951 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || | ||| ||||| ||||| || | || || | ||| ||||||||||| Sbjct 139952 TCGACCTCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904904205984600