Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11465 122 3e-22 seq10186 105 2e-17 seq10653 91.5 4e-13 >seq11465 Length=103455 Score = 122 bits (134), Expect = 3e-22 Identities = 196/276 (71%), Gaps = 12/276 (4%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || | ||||||||| |||||||||||| | |||||||||||||| Sbjct 55259 TTCCATAGCCTTTATAAGACGACGCTGGATATAACCAGTTTCGGCAGTTTTTACAGCTGT 55318 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT---AG 302690 ||| || ||||| |||||||||||||||| |||| ||||| ||| | | || | Sbjct 55319 ATCGATAAGACCTTCACGACCACCCATAGCGTGGA--AATAG-AATTCGGATGGTGTCAA 55375 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTT 302747 || ||| | || | || |||||||| | | ||| || || ||||||| || Sbjct 55376 ACCGGCAAGGTATGAATTTTCTACGAAACCTCTGGACTCAGGACCGTAATCGTC---TTT 55432 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 | | || || |||||||| | || | |||||||| ||||| || || || ||||| Sbjct 55433 GATGAAATGGGGCAGGGTACGCTTGCGGAAACCGTATGGTATACGTTTACCTTCTACGTT 55492 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || || | || | ||| | ||| || ||||| Sbjct 55493 CTGTTGACCTACACAAGCAATAACCTGGGAGATATT 55528 Score = 91.5 bits (100), Expect = 4e-13 Identities = 116/157 (74%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| |||| ||| || ||||| ||||||||||||||||||||||| || || || Sbjct 56418 TTGTGGCACATGCAAGTTCATTTCATCACCGTCAAAATCAGCATTGTAGGGAGAGGTACA 56477 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACAC--GGGCTTTATGACACATC 303744 | | |||||| ||||| || | || ||| |||||| | | ||||| |||| Sbjct 56478 GGACAAGTTCATACGGAATGT-TGAC----CATGGTAACACTTTGACACGATGACCCATC 56532 Query 303745 ATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781 ||| |||| ||||||| || |||||||||||||||| Sbjct 56533 ATACTCATTTTGTGTAGTGTGGGCTGACGATTGAAAA 56569 >seq10186 Length=270785 Score = 105 bits (116), Expect = 2e-17 Identities = 557/874 (64%), Gaps = 19/874 (2%) Strand=Plus/Plus Query 155403 GTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTT 155462 ||||| || ||||| || || |||||||| | || ||||| || |||| | | ||| Sbjct 28254 GTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATTGGACTTTCTT 28313 Query 155463 GTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAA 155518 | |||| | ||| || | || | ||||| || ||||| | ||| ||||| | Sbjct 28314 G-CTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGCGCGTAACAA- 28371 Query 155519 TACCTTGGTTACGT-CTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACA 155577 |||||| || | || | |||||| | ||| | || || || | | ||||||| Sbjct 28372 --CCTTGGCCACATTCTTC-AATTTCTTGAAATCATACGTCTTTTCTGGAGTCACAAACA 28428 Query 155578 TACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCT 155636 || |||| ||| || |||| |||||| || ||| | || | | | || ||| || Sbjct 28429 TATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGA-GTACTCA 28487 Query 155637 ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTA 155696 ||||| || |||| || | ||||| ||||| | ||| | || ||| || Sbjct 28488 ACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACTCTTG 28547 Query 155697 CTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGA 155756 | || ||||| || ||| | || || || ||||||||||| |||| || || || | Sbjct 28548 CGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTCGATG 28607 Query 155757 ATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATAT 155816 || | ||| || | | || || | | | ||| | |||||||| || ||| Sbjct 28608 ATGGCAAACCATAGCGCCTGCGCTTTTACGGTCCTATTGGCTTTGCCTTCCTTTTCGTAT 28667 Query 155817 TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCG 155876 || || || || | || || || | ||| || || || || || | Sbjct 28668 TTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGACATTTGTGT 28727 Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || || | |||||||| ||| | ||||||| |||||| | ||| | Sbjct 28728 GGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGATCGGGAATC 28787 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCTTCCGTA 155994 |||| || |||||||| || || || | || ||| || | ||| ||| || ||| || Sbjct 28788 CAAAGGGCGTAGAAAAGATCTCTGGCACGATG-CTCTTCCTTGCCTGTGTTT-TTCTTTA 28845 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 || || || || |||||| | ||| ||| |||| ||| || ||||| ||| Sbjct 28846 AATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAATGCGCCAG 28905 Query 156055 TCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | ||||| ||| ||||| ||||| || ||| || ||||| || | || ||| | Sbjct 28906 GACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACCCTTAACATGG 28965 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 | | | ||||||||| |||||||| || ||| |||| | || | ||| | | Sbjct 28966 GCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGGCGCGTATAC 29025 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAG 156231 ||| | || | ||||| || || | | |||| || || ||||| | | |||| Sbjct 29026 AATGGACATTGATGCCAATTCCTCCGGCCGATTTCGATATCATGGCGCACTGTTCAACAG 29085 Query 156232 TATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||||||||||||||| |||||| | |||| Sbjct 29086 ACTTGAAAATACCTTCAATCGAATCAGCCACCAT 29119 >seq10653 Length=175216 Score = 91.5 bits (100), Expect = 4e-13 Identities = 213/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATT-TTGTCTCGCAATTGC 289088 |||| ||||| ||||| ||||| |||| | |||||| || | ||| || | || Sbjct 13572 CCAATTGCATCGATTTCATCAATATAAATAATACACGGCGATCTCTTGCGTCCCTCTTTG 13513 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || ||| ||||| ||||| | || || | |||| || |||||| | ||| || || | Sbjct 13512 AA-TAAGTCTCTAACACGTGCAGCACCCAAACCACCAATCATTTCAATAAACTCTGATCC 13454 Query 289149 GG--ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 || ||| | ||| | || | ||||| |||||| ||| | || || | |||| Sbjct 13453 ATTCATGCTT--AGGAAGGGAACTTGGGCTTCCGTTGCTACAGCCTTGGCTAGCAATGTC 13396 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| || || ||||| || | | |||| ||||||||||||||||| | | Sbjct 13395 TTACCGCAACCTGGCGGTCCAAGTAGCAAAGCTCCTTTTGGTACTTTTGCCCCCAAACGC 13336 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| ||||| ||| |||| | | || |||| ||| | || ||| | ||| || || Sbjct 13335 TGATACTTCTCGGGGTCTTTTAGATAGTCCACAAATTCTTTAACTTCTTGTTTCGCTTCT 13276 Query 289327 TCACATCCTGCTACATC 289343 | | || || ||||| Sbjct 13275 TGCAAACCGGCAACATC 13259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471431263058119