Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq10162 96.9 4e-14 seq10906 93.3 5e-13 seq10151 91.5 2e-12 seq9529 91.5 2e-12 >seq10162 Length=1180275 Score = 96.9 bits (106), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| ||| | || || |||||||||||||| || || || ||| || Sbjct 56699 GCCAATTCACCGGGCAACAATAGACGGACGGCGGTCTGGATTTCCCGACTGGTGATGGTT 56758 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| ||| ||| ||| |||||| | || || |||| || ||| Sbjct 56759 GAGCGCTTGTTGTAGTGGACCAAACGAGAGGCTTCGGTGGCAATACGTTCGAAGATATCG 56818 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || ||| |||| ||| | |||| |||||| || |||||| || || Sbjct 56819 TTGACGAAACTGTTTATGATGCTCATAGCCTTGAAGGAGATACCGGTGTCGGGATGGACT 56878 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| ||||| ||| Sbjct 56879 TGCTTCAACACTTTGTAAATG 56899 >seq10906 Length=151380 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| ||| | || | ||||||||||||| || || || ||| | Sbjct 123373 GCCAATTCACCGGGCAACAATAGACCGTCGGCGGTCTGGATTTCCCGACTGGTGATGGCC 123432 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | ||||||||| |||| |||| ||| ||| |||| | | || || |||| || ||| Sbjct 123433 TAGCGCTTGTTGTAGTGGGCCAAACGAGAGGCTTCGGCGGCAATACGTTCGAAGATATCG 123492 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||| ||| | |||| |||||| || |||||| || || Sbjct 123493 TTGACGAAACTGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCGGGATGGACT 123552 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| ||||| ||| Sbjct 123553 TGCTTCAACACTTTGTAAATG 123573 >seq10151 Length=262553 Score = 91.5 bits (100), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| ||| | || || |||||||||||||| || || || ||| || Sbjct 243359 GCCAATTCACCGGGCAACAATAGACGGACGGCGGTCTGGATTTCCCGACTGGTGATGGTC 243300 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| |||| ||| ||| |||| | | || || |||| || ||| Sbjct 243299 GAGCGCTTGTTGTAGTGGGCCAAACGAGAGGCTTCGGCGGCAATACGTTCGAAGATATCG 243240 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||| ||| | |||| ||||||| | |||||| | || Sbjct 243239 TTGACGAAACTGTTCATGATGCTCATGGCCTTGGAGGAGATGTCGGTGTCGGGATCGACT 243180 Query 1254528 TGCTTGAGCACCTTG 1254542 ||||| | ||| ||| Sbjct 243179 TGCTTCAACACTTTG 243165 >seq9529 Length=773432 Score = 91.5 bits (100), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || || ||||| || | |||||| || ||| | || || || || Sbjct 332361 AGAAGCGTACAGATGACATTTCCTCTTGGGACGCTGATTTTCTTAAGGTGGATCAAGGCA 332420 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || |||||| | |||||||| || || || || || || || ||| || Sbjct 332421 CACTATTCGAATTGATCTTGGCCGCCAATTATCTAGATATTAAAGGACTCCTAGATGTTA 332480 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 || || ||||||| |||||||||||||||||| | || || || || || || || | Sbjct 332481 CATGTAAAACTGTGGCTAACATGATCAAGGGCAAGACACCAGAAGAAATACGAAAAACAT 332540 Query 1592286 TTAACATCAA 1592295 |||| ||||| Sbjct 332541 TTAATATCAA 332550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105457940839379