Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq13603 86.0 8e-12 seq10247 86.0 8e-12 >seq13603 Length=12303 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 23078 AATTTTTAAAAGGAAATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAG 23137 ||||||| | || ||||||| ||||| ||||| |||||||| || || | | || | Sbjct 8897 AATTTTTTAGGCGAGATCACGGCGATGGTTATAAATTTGATGGACCTGGATATGTCTTGG 8956 Query 23138 CTCATGCTTTTTTCCCTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAA 23197 ||||||| || | || || ||| ||||||||||||| ||||||||| || |||| Sbjct 8957 CTCATGCCTTCTATCCCGGCGTTGGTCGAGGAGGAGATGCCCATTTTGATGATGATGAAA 9016 Query 23198 ATTGG 23202 ||||| Sbjct 9017 ATTGG 9021 >seq10247 Length=256128 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 23078 AATTTTTAAAAGGAAATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAG 23137 ||||||| | || ||||||| ||||| ||||| |||||||| || || | | || | Sbjct 8605 AATTTTTTAGGCGAGATCACGGCGATGGTTATAAATTTGATGGACCTGGATATGTCTTGG 8664 Query 23138 CTCATGCTTTTTTCCCTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAA 23197 ||||||| || | || || ||| ||||||||||||| ||||||||| || |||| Sbjct 8665 CTCATGCCTTCTATCCCGGCGTTGGTCGAGGAGGAGATGCCCATTTTGATGATGATGAAA 8724 Query 23198 ATTGG 23202 ||||| Sbjct 8725 ATTGG 8729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632327627319560