Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10585 149 5e-31 seq9576 113 4e-20 >seq10585 Length=184561 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||||| || || || || |||| || || || |||||||| || || || || Sbjct 90049 TTGTGATCGAATTGGGTCTGGGCACCCAATTCACAGCCAAAGTACTTGGTTGGATACGTG 89990 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| | |||| ||| |||| | |||| ||| ||||| ||||||||||||||||| Sbjct 89989 GCCGGTCTGCCAATGGCCCTGGCCACATCGGCCATATTGACAATGACAGTCTTGATGCCA 89930 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| || || |||||||| ||| || |||||||| ||||| ||||| || Sbjct 89929 TTGCCCTTGCCCTCCACCTTGGCCTGGATCCGGGGCATTTTATAGCGATAGAAAATATCG 89870 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | ||||||||||| || || || || ||||| Sbjct 89869 GTGACATTGCGGTTTACATTGACGGTACCCAT 89838 >seq9576 Length=1569244 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || || |||||||| ||||||||||||||| | || ||||||| Sbjct 195423 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCT 195482 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || ||| || ||| |||||||||||| | || || Sbjct 195483 TCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGAC 195542 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||||| || | ||| ||||| ||||| || |||| | ||| | | ||||| Sbjct 195543 CAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTATCAGATTAT 195602 Query 110450 AACATTCAAAAAGAATCTAC 110469 || || || |||||||| || Sbjct 195603 AATATCCAGAAAGAATCAAC 195622 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| || || |||||||| || ||| | ||| || ||| | Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||| |||| |||| | ||| || | || |||||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| ||||| |||| || | ||||| || || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGTGG 196336 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || || || |||||||| || ||| | ||| || ||| | Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| || ||| ||||| ||||| | || |||||| Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196001 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || || ||| |||| |||| | ||| || | || || ||| Sbjct 196002 CAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196061 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| ||||| |||| || | ||||| || || Sbjct 196062 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| || || || || ||||| || | ||| || ||| | Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| || ||| ||||| ||||| | || |||||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || || ||| |||| |||| | ||| || | || |||||| Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 195833 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| ||||| |||| || | ||||| || || Sbjct 195834 ATCCAGAAAGAATCTACTTTGCATTTGGTATTGCGTCTGCGTGGTGG 195880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412738519516091