Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10162 114 2e-19 seq10151 107 3e-17 seq10906 104 4e-16 seq11462 93.3 7e-13 seq9529 87.8 3e-11 >seq10162 Length=1180275 Score = 114 bits (126), Expect = 2e-19 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || ||||||||||| || |||||| ||| | |||| ||| ||| ||| Sbjct 56655 TGTATTTAGTAACAGCCTTGGTACCTTCACTGACGGCATGCTTAGCCAATTCACCGGGCA 56714 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || |||||||||||||| || || || ||| || ||||||||| | Sbjct 56715 ACAATAGACGGACGGCGGTCTGGATTTCCCGACTGGTGATGGTTGAGCGCTTGTTGTAGT 56774 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||| || ||| |||||| | || || |||| || |||||||| || ||| | Sbjct 56775 GGACCAAACGAGAGGCTTCGGTGGCAATACGTTCGAAGATATCGTTGACGAAACTGTTTA 56834 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || |||||| || || ||||| | ||| |||| Sbjct 56835 TGATGCTCATAGCCTTGAAGGAGATACCGGTGTCGGGATGGACTTGCTTCAACACTTTGT 56894 Query 1485710 AAA 1485712 ||| Sbjct 56895 AAA 56897 >seq10151 Length=262553 Score = 107 bits (118), Expect = 3e-17 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || ||||||||||| || ||||| |||| | |||| ||| ||| ||| Sbjct 243403 TGTATTTAGTAACAGCCTTGGTACCTTCACTGACGGTGTGCTTAGCCAATTCACCGGGCA 243344 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || |||||||||||||| || || || ||| || ||||||||| | Sbjct 243343 ACAATAGACGGACGGCGGTCTGGATTTCCCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 243284 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || ||| |||| | | || || |||| || |||||||| || ||||| Sbjct 243283 GGGCCAAACGAGAGGCTTCGGCGGCAATACGTTCGAAGATATCGTTGACGAAACTGTTCA 243224 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| | |||||| | || ||||| | ||| ||| Sbjct 243223 TGATGCTCATGGCCTTGGAGGAGATGTCGGTGTCGGGATCGACTTGCTTCAACACTTTG 243165 >seq10906 Length=151380 Score = 104 bits (114), Expect = 4e-16 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 1485481 ACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGC 1485540 || ||||||||||| || ||||||||| | |||| ||| ||| ||| | || | Sbjct 123340 ACAGCCTTGGTACCTTCACTGACGGCGTGGTTAGCCAATTCACCGGGCAACAATAGACCG 123399 Query 1485541 ACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGG 1485600 ||||||||||||| || || || ||| | | ||||||||| | | |||| || Sbjct 123400 TCGGCGGTCTGGATTTCCCGACTGGTGATGGCCTAGCGCTTGTTGTAGTGGGCCAAACGA 123459 Query 1485601 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATC 1485660 ||| |||| | | || || |||| || |||||||| || ||||||||| ||| Sbjct 123460 GAGGCTTCGGCGGCAATACGTTCGAAGATATCGTTGACGAAACTGTTCATGATGCTCATG 123519 Query 1485661 GATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | ||| |||||| || |||||| || || ||||| | ||| ||||||| Sbjct 123520 GCCTTGGAGGAGATACCGGTGTCGGGATGGACTTGCTTCAACACTTTGTAAA 123571 >seq11462 Length=102054 Score = 93.3 bits (102), Expect = 7e-13 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 1485478 GTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGG 1485537 || || ||||||||||| || |||||||||| | |||| ||| ||| ||| | || Sbjct 40236 GTAACAGCCTTGGTACCTTCACTGACGGCGTGCTTAGCCAATTCACCGGGCAACAATAGA 40177 Query 1485538 CGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGG 1485597 || |||||||||||||| || || || ||| || ||||||||| | | |||| Sbjct 40176 CGGACGGCGGTCTGGATTTCCCGACTGGTGATGGTCGAGCGCTTGTTGTAGTGGGCCAAA 40117 Query 1485598 CGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGAC 1485657 || ||| |||| | | | || |||| || |||||| | || ||||||||| | Sbjct 40116 CGAGAGGCTTCGGCGGCAGTACGTTCGAAGATATCGTTGTCGAAACTGTTCATGATGCTC 40057 Query 1485658 ATCGATTTGTTGGAGATGCCCACGTCGGGGT 1485688 || | ||| |||||| || | ||||| || Sbjct 40056 ATGGCCTTGGAGGAGATACCGATGTCGGTGT 40026 >seq9529 Length=773432 Score = 87.8 bits (96), Expect = 3e-11 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||| || || |||||||| | |||||| | ||| |||| || ||| | Sbjct 332360 GAGAAGCGTACAGATGACATTTCCTCTTGGGACGCTGATTTTCTTAAGGTGGATCAAGGC 332419 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || || |||||| | |||||||| || || || || || ||||| ||| | Sbjct 332420 ACACTATTCGAATTGATCTTGGCCGCCAATTATCTAGATATTAAAGGACTCCTAGATGTT 332479 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 || || || ||||| ||| | |||||||||||| | || || || || || || || Sbjct 332480 ACATGTAAAACTGTGGCTAACATGATCAAGGGCAAGACACCAGAAGAAATACGAAAAACA 332539 Query 2035746 TTTAACATCAA 2035756 ||||| ||||| Sbjct 332540 TTTAATATCAA 332550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914067104368793