Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq10951 107 1e-18 seq7037 107 1e-18 seq9576 93.3 3e-14 seq9744 87.8 1e-12 >seq10951 Length=171266 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| || | |||| ||||| || ||||| ||||| || | | |||| |||| Sbjct 139793 AGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 139852 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || ||||||||||||| ||||| || ||| | || | || |||||||| Sbjct 139853 TCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCT 139912 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | || | |||||| || | || |||||| Sbjct 139913 TGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTC 139972 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 139973 TTACCGGTGAGGGTCTTGACGAAGATCTGCAT 140004 >seq7037 Length=35088 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | |||||||| || | || |||||||||||| ||||| || || Sbjct 22913 CCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGAC 22972 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || |||| |||| ||| |||||||| || || | |||||| || || | || Sbjct 22973 AATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGA 23032 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || |||||| | | || | ||| | ||| || Sbjct 23033 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACC 23092 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | |||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 23093 TCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCAT 23139 >seq9576 Length=1569244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||||||||| || | | || |||| |||| ||||| ||||||||| Sbjct 196072 TCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAG 196013 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||| || ||| | || | || |||||||| | ||||| ||||||| | Sbjct 196012 ATCAAGCGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTT 195953 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | || || || | ||| || || || || || | ||||||||| Sbjct 195952 TCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACG 195893 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 195892 AAGATTTGCAT 195882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||||||||| || | | || |||| |||| ||||| ||||||||| Sbjct 196528 TCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAG 196469 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| | || | || |||||||| | ||||| |||||| | Sbjct 196468 ATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTT 196409 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | || || || | || ||||| || || || ||||||||||| Sbjct 196408 TCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACG 196349 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 196348 AAGATTTGCAT 196338 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||||||||| || || |||| | || |||| ||| || || || || Sbjct 196756 TCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAA 196697 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||| || ||| | || | || |||||||| | ||||| |||||| | Sbjct 196696 ATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTT 196637 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | || || || | || ||||| || || || ||||||||||| Sbjct 196636 TCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACG 196577 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 196576 AAGATTTGCAT 196566 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||||||| |||| || || | || ||||| || ||||| || |||| |||| |||| Sbjct 195637 AGGACCAAATGAAGTGTTGAT-TCTTTCTGGATATTATAATCTGATAATGTGCGTCCATC 195579 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| |||| ||| |||||| | || | || || ||||| Sbjct 195578 TTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195519 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| ||| | | || | || | ||| || || | ||| ||||| Sbjct 195518 CTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGT 195459 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| || ||||||||||| Sbjct 195458 TTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 195426 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || | | || |||| |||| ||||| ||||||||| Sbjct 195844 TCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAG 195785 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || || || ||| | || | || |||||||| | ||||| ||||||| | Sbjct 195784 ATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTT 195725 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | || || || | || ||||||||||| || | || || ||| Sbjct 195724 TCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACA 195665 Query 34967 AAGATCTGCAT 34977 || |||||||| Sbjct 195664 AAAATCTGCAT 195654 >seq9744 Length=475756 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || |||||| |||||||| || || |||| | | || |||| Sbjct 179464 CAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATC 179523 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||| ||||||||||| || | || || |||||| | || | || |||||||| Sbjct 179524 TTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTC 179583 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || | || | || || || | || || || Sbjct 179584 CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGT 179643 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 179644 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || || || |||| | |||| |||| || | ||| ||||| ||||| Sbjct 178802 TCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAA 178861 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||||||| | || | || ||||| || | ||||| ||||| | Sbjct 178862 ATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTT 178921 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | || | ||| || || | || ||||||||||| || | || || || Sbjct 178922 TCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACG 178981 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 178982 AAAATTTGCAT 178992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325611479291453