Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq9576 145 1e-29 seq9744 116 6e-21 seq7037 100 4e-16 seq10951 84.2 3e-11 >seq9576 Length=1569244 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || ||||| || ||||| ||||| | || || || | | | Sbjct 195427 TGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCTTCAG 195486 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || ||| |||||| || |||||||||||||| || || |||| Sbjct 195487 ATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGACCAAC 195546 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||| || | || ||| | || ||| |||||||||||| Sbjct 195547 AAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTATCAGATTATAATA 195606 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | ||||| || | || |||||||||||| Sbjct 195607 TCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGGTA 195654 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| || || || ||||| || || | || || |||| | || Sbjct 196111 TGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCCG 196170 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || || || || || || ||||| ||||| || ||||||| Sbjct 196171 ATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAAC 196230 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || || || || || ||| | | || || | || || || | Sbjct 196231 AACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACA 196290 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | ||||| || || || Sbjct 196291 TCCAAAAAGAATCTACTTTGCATTTGGTCTTGCG 196324 >seq9744 Length=475756 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || ||||| ||||| ||||| | || ||||| | | | Sbjct 178763 TGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTCAG 178704 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||||| ||| ||| ||||| ||||| || || || | Sbjct 178703 ATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCAGC 178644 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || ||||||||||| ||| | || ||| | ||||| |||| Sbjct 178643 AGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAATA 178584 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || ||| | ||||| || |||| Sbjct 178583 TTCAAAAGGAGTCAACTTTGCATTTGGTTCTACG 178550 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || || |||||||| | || || |||| | | Sbjct 179675 TGCAGATCTTCGTGAAGACCTTGACCGGCAAGACAATTACATTGGAGGTGGAACCTTCGG 179616 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| |||||| || || ||||||||||| || || |||| Sbjct 179615 ATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATTCCTCCAGACCAAC 179556 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || |||||||| || ||| | | || ||| | ||||| || | Sbjct 179555 AGCGTTTAATTTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTATCTGATTACAACA 179496 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || ||| | ||||| || Sbjct 179495 TTCAAAAGGAGTCAACTTTGCATTTGGT 179468 Score = 111 bits (122), Expect = 2e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | |||||||| || ||||| || || ||| | || || || | || | Sbjct 178991 TGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATCA- 178933 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| || ||||| ||| ||| ||||| ||||| || || || Sbjct 178932 GATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 178873 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || || ||||||||||| ||| | || ||| | ||||| ||| Sbjct 178872 CAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAAT 178813 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || || || ||||| ||| | ||||| || |||| Sbjct 178812 ATTCAGAAGGAATCAACTCTGCATTTGGTCCTACG 178778 Score = 109 bits (120), Expect = 9e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || || ||||| ||||| ||||| | || ||||| | || | Sbjct 179447 TGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATCA- 179389 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| || ||||| ||| ||| ||||| ||||| || || || Sbjct 179388 GATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 179329 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || || ||||||||||| ||| | || ||| | ||||| ||| Sbjct 179328 CAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAAT 179269 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || ||||| || || ||| | ||||| || Sbjct 179268 ATTCAAAAGGAGTCAACTTTGCATTTGGT 179240 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || || ||||| ||||| ||||| | || || || | || | Sbjct 177738 TGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATCA- 177680 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| || ||||| || ||| ||||| ||||| || || ||| Sbjct 177679 GATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAA 177620 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | ||||| || || ||||||||||| ||| | || || | ||||| ||| Sbjct 177619 CAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAAT 177560 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTA 146240 || ||||| |||||||| | ||| | ||| Sbjct 177559 ATTCAAAAGGAATCGACCCTACATCTTGTA 177530 Score = 93.3 bits (102), Expect = 7e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || ||||| || || ||| | || || || | | Sbjct 178535 TGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCCTCAG 178476 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || || || ||| ||| ||||| ||||| || || || | Sbjct 178475 ATACCATAGAAAATGTTAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCTGACCAGC 178416 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || ||||| |||| ||| | | ||||| | |||||||||| Sbjct 178415 AGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACGTTGTCGGATTATAATA 178356 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || ||| | ||||| || |||| Sbjct 178355 TCCAAAAGGAGTCAACTTTGCATTTGGTCCTACG 178322 >seq7037 Length=35088 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || ||||| ||||||| ||| || || || ||||| || |||||||| |||||| Sbjct 23079 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCGGATCAA 23020 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| || | |||||||| || |||||||| || ||| |||| || | ||||||||| Sbjct 23019 CAACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGATTATAAT 22960 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || || || || ||| | ||||| || | || ||| | |||||| Sbjct 22959 ATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTTTACGTGGAGGT 22912 >seq10951 Length=171266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || || || || ||| | || || || | | || Sbjct 140003 TGCAGATCTTCGTCAAGACCCTCACCGGTAAGACCATCACTTTGGAGGTCGAGCCTTCCG 139944 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || ||| || ||| || ||||| || || || ||||||| Sbjct 139943 ACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCAGATCAAC 139884 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | | || || | || || || | Sbjct 139883 AACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAACA 139824 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||| ||||| || | ||||| ||| Sbjct 139823 TCCAAAAGGAATCCACCTTGCATTTGGTA 139795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785965072612040