Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq10186 183 7e-41 seq10162 147 5e-30 seq11039 93.3 1e-13 seq11465 91.5 3e-13 >seq10186 Length=270785 Score = 183 bits (202), Expect = 7e-41 Identities = 411/616 (67%), Gaps = 11/616 (2%) Strand=Plus/Minus Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 |||||| ||||||||||||| | || || || | || | || || ||| | Sbjct 29111 TGATTCGATTGAAGGTATTTTCAAGTCTGTTGAACAGTGCGCCATGATATCGAAATCGGC 29052 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 ||||||||||| || | || ||| ||| ||| | || ||| | ||| || | Sbjct 29051 CGGAGGAATTGGCATCAATGTCCATTGTATACGCGCCAAGGGAACTTCTATTGCCGGCAC 28992 Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || || | || | ||| | || || |||||||| || |||||| | |||| || Sbjct 28991 TAATGGCACATCCAATGGTTTAGTGCCCATGTTAAGGGTATTCAACAATGTTGCACGTTA 28932 Query 110726 TGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 ||| |||||||||| || | |||| ||||||| |||||| | ||||| ||||| Sbjct 28931 TGTCGATCAAGGTGGCGGCAAACGTCCTGGCGCATTTGCCATCTATTTGGAACCATGGCA 28872 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842 ||| ||||| ||||| || || || | ||||| ||| ||||| || | || Sbjct 28871 TTCGGATATTTTTGAGTTTTTGGATTTAAAGAAAAACACAGGCAAGGAAGAGCATCGTGC 28812 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||| | || || || | |||||| | ||| | || ||||| ||||| |||| || Sbjct 28811 CAGAGATCTTTTCTACGCCCTTTGGATTCCCGATCTGTTTATGAAGCGTGTCGAAGAGAA 28752 Query 110903 TGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAA 110962 |||| ||||| || |||||||| || | ||| || ||| ||||| | ||| | Sbjct 28751 TGGCGACTGGTCGCTAATGTGTCCACACAAATGTCCGGGGCTACAAGATGTGTGGGGAGA 28692 Query 110963 AGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA----AA 111018 || |||||| | |||||||||||||| ||||| |||||||| || || | Sbjct 28691 CGAATTTGAAAAACTTTACGAAAAATACGAAAAGGAAGGCAA----AGCCAATAGGACCG 28636 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | ||| || | || ||||| ||| | ||| | ||||| ||||| ||||| |||| Sbjct 28635 TAAAAGCGCAGGCGCTATGGTTTGCCATCATCGAAGCCCAAGTGGAAACAGGAACCCCTT 28576 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 |||| ||| ||||| | |||||||| ||||||| ||| | || || || | Sbjct 28575 ATATGCTGTTCAAAGACGCTTGCAATCGCAAGAGTAATCAACAAAATATTGGCACGATCA 28516 Query 111139 AGTCTAGTAATTTGTG 111154 | | || |||||||| Sbjct 28515 AATGCAGCAATTTGTG 28500 >seq10162 Length=1180275 Score = 147 bits (162), Expect = 5e-30 Identities = 331/488 (68%), Gaps = 12/488 (2%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 |||| ||||| || || ||||| | ||||||| | || || ||||||||| Sbjct 71841 TTAAGAAGAAGGCCGATTGGGCCTTGTCATGGATTTCATCAGAATCGGCTAATTTTGGAG 71782 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAG--GTGCTTTCTGTGC 131913 | | || | || |||||| ||||| |||||||| |||||| || ||| | Sbjct 71781 AACGTGTTATTGCGTTTGCTGCCGTTGAGGGTATATT--TTTCAGCGGTAGTTTTGCCTC 71724 Query 131914 TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCAT 131973 ||||||||||||||||| ||||| | |||||||| | |||| |||||| |||| || Sbjct 71723 CATCTTTTGGCTTAAGAAACGTGGTCTAATGCCTGGCTTGACATTCTCCAATGAATTGAT 71664 Query 131974 CTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG- 132032 |||| | || |||| |||||| ||| ||||| || | || | | || || || || Sbjct 71663 CTCGCGTGACGAAGGCTTGCATTGTGATTTTGCCGTACTGATGT-TCAAATATCTGGTGC 71605 Query 132033 ATAAACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAA 132090 | |||| | ||| || ||||| || | || | || || || | || || | Sbjct 71604 AGAAAC--CCAGCAAAGAACGTATTATTGAAATCATCCGAGATGCTGTAAAAATTGAACA 71547 Query 132091 GGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAA 132150 ||| || | || |||||| |||| || ||||| ||||| |||||| ||| | ||| Sbjct 71546 GGAATTCCTAACTGAAGCTCTGCCATGTAATTTAATTGGAATGAATTGTGAATTAATGTC 71487 Query 132151 GGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATT-CCAAGATTT 132209 ||| || |||||||| ||||| |||||| | | || |||||| || ||| || | Sbjct 71486 GGAATATATTGAATTTGTTGCCGATCGTCTGCTGGTTGAA-TTGGATGTTGGCAAAATCT 71428 Query 132210 ATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACT 132269 | || ||| |||| || | | | ||||| ||||| | || |||||||| || | Sbjct 71427 ACAATACCAAAAATCCTTTCCCCTTCATGGAAATGATTTCATTGGATGGTAAAACAAATT 71368 Query 132270 TCTTCGAA 132277 |||| ||| Sbjct 71367 TCTTTGAA 71360 >seq11039 Length=147202 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || ||||||||| | || || || |||| |||||||| || ||| |||| | | ||| Sbjct 144946 GTGCTGTTCAATCGCCAGCCTTCTTTGCACAAAATGTCCATTATGTGTCATCAGGCCAAG 144887 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | || || || || || |||| |||| ||||| || |||||||| ||| Sbjct 144886 GTGCAACCTCAGCGTACCTTCCGTTTTAATGAGTGTGCCTGTACACCCTATAATGCTGAT 144827 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || ||||| |||||||||||| ||||| |||| ||| Sbjct 144826 TTCGATGGCGATGAAATGAATTTGCATTTACCCCAA 144791 >seq11465 Length=103455 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| || |||||| |||| | |||||| | || || |||| || |||||| Sbjct 56597 AGACATTTACGCGATGATGATTTGGTTATTTTCAATCGTCAGCCCACACTACACAAAATG 56538 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| |||||||| ||| | | | ||||| || | || | || Sbjct 56537 AGTATGATGGGTCATCGTGTCAAAGTGTTACCATGGTCAACATTCCGTATGAACTT--GT 56480 Query 305426 GCTTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || |||| || || ||||| |||||||| || ||||||||||| ||||||| || Sbjct 56479 CCT-GTACCTCTCCCTACAATGCTGATTTTGACGGTGATGAAATGAACTTGCATGTGCCA 56421 Query 305483 CAATC 305487 ||||| Sbjct 56420 CAATC 56416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186501273879007