Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9576 120 2e-22 seq9744 107 1e-18 seq10951 104 2e-17 seq7037 87.8 1e-12 >seq9576 Length=1569244 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| || |||||||| | ||| ||||| || |||||||| || || Sbjct 195881 ACCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGA 195822 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||| || || ||||| || ||||||||||| |||||| | || Sbjct 195821 CAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGG 195762 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| | || || | || | |||||| | ||| | Sbjct 195761 AATACCTTCCTTGTCTTGAATTTT-AGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAA 195703 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| ||||| ||||||||| Sbjct 195702 CTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCATA 195653 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || || || || ||||| || ||||| || |||||| |||| ||| Sbjct 196774 ACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCC 196715 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| || |||||||||||||| || |||||| | || | |||||| ||||| | Sbjct 196714 AATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGA 196655 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | || | || | |||||| | ||| || || | ||||| ||||| Sbjct 196654 ATTTT-GGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTT 196596 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || ||||| ||||| |||||| Sbjct 196595 GCCAGTCAGGGTCTTTACGAAGATTTGCATA 196565 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| || |||||||| | ||| ||||| || ||||| || || || Sbjct 196565 ACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGA 196506 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||| || || ||||| || |||||||||||||||||| | || Sbjct 196505 CAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGG 196446 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| | | || | || | || ||| | ||| | Sbjct 196445 AATACCTTCCTTGTCTTGAATTTT-AGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAA 196387 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || ||||| ||||| |||||| Sbjct 196386 CTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCATA 196337 >seq9744 Length=475756 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||||| |||||||| ||||| || || || || ||||||||||| Sbjct 178766 CCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGAT 178825 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || ||||||||||| || ||||||||||||||||| ||| | || Sbjct 178826 AAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178885 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || ||||| | | |||| || | ||| || || ||||| Sbjct 178886 ATACCTTCCTTATCTTGGATTTT-GGCCTTGACATTTTCTATGGTATCTGATGGCTCCAC 178944 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || ||||| || || || ||||| Sbjct 178945 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| | ||| ||| ||||| ||||||||||| || Sbjct 179450 CCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGAT 179509 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||||||||||||||| ||||| |||||||| || ||| | || Sbjct 179510 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGA 179569 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || |||| || | || || | |||||| Sbjct 179570 ATGCCTTCCTTGTCCTGAATTTT-AGCTTTTACATTTTCAATTGTATCCGAAGGTTCCAC 179628 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || || || || || ||||||||||| Sbjct 179629 CTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| | ||| ||| ||||| || |||||||| || Sbjct 179222 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGAT 179281 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || || |||||||| || || ||||||||||||||||| ||| | || Sbjct 179282 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 179341 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || ||||| || | |||| || | ||| || || || || Sbjct 179342 ATACCTTCCTTATCTTGGATTTT-TGCCTTGACATTTTCTATGGTATCTGATGGCTCTAC 179400 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||||||||| || || || || || || ||||| Sbjct 179401 TTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| |||||||| | ||| ||| ||||| || ||||||||||| | ||||| | Sbjct 178549 ACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCC 178608 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || |||||||| || || ||||||||||||||||| ||| | || | |||||| || Sbjct 178609 ATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTT 178668 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||||| | | |||| || | ||| || | || || || | || | Sbjct 178669 ATCTTGGATTTT-GGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAA 178727 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||||||||| || || || || || || ||||| Sbjct 178728 TAGTTTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||||| |||||||| | ||| ||| ||||| || ||||||||||| Sbjct 178994 CCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGAT 179053 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || | ||||| || || ||||||||||||||||| ||| | || Sbjct 179054 AAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 179113 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| | | |||| || | ||| || || ||||| Sbjct 179114 ATTCCTTCTTTATCCTGGATTTT-GGCCTTGACATTTTCTATGGTATCTGATGGCTCCAC 179172 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || || || ||||| Sbjct 179173 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 |||||| || || ||||| || ||||||||||| | ||||| | || || ||||| Sbjct 177536 ATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCATCTTCTAATTG 177595 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || || |||||||||||||| || ||| | || | |||||| || || ||||| Sbjct 177596 TTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATTTT 177655 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | |||| || | ||| || || || || || | || || |||||||||| Sbjct 177656 -GGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCTG 177714 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || || || ||||| Sbjct 177715 TCAAAGTCTTGACGAAAATTTGCAT 177739 >seq10951 Length=171266 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | ||| || ||||| |||||||| ||||| Sbjct 139777 ACCACCACGAAGACGGAGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGA 139836 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||||||||| ||||| || |||||||| || |||||| | || Sbjct 139837 CAAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGG 139896 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | |||| || | ||||||| | || | Sbjct 139897 GATACCTTCCTTGTCTTGGATCTT-AGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGA 139955 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || ||||| || | || || || ||||||||||| Sbjct 139956 CCTCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 140004 >seq7037 Length=35088 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | ||||| | |||||||| | ||| ||| || || || || ||||| | Sbjct 22911 CACCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAG 22970 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||| || | || ||||||||||||||||||||||| || || || ||||| | | Sbjct 22971 ACAATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTG 23030 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| ||| || | || |||| || | ||||| || || Sbjct 23031 GAATTCCCTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCGATAGTGTCAGATGGCTCA 23089 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | || || ||||| |||||||| Sbjct 23090 ACCTCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCAT 23139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328621927439040