Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9576 129 1e-24 seq10951 95.1 3e-14 seq7037 95.1 3e-14 seq9744 84.2 5e-11 >seq9576 Length=1569244 Score = 129 bits (142), Expect = 1e-24 Identities = 165/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || ||||| || ||||| |||||||| ||| ||| ||| Sbjct 195657 CAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCCGAC 195716 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| |||||||| || ||||| ||| || || ||| Sbjct 195717 ACTATCGAAAACGTCAAAGCTAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGA---TCA 195772 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || ||||||||||| ||||||||||||||||| | || ||| | || ||||| Sbjct 195773 ACAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 195832 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | |||||||||| |||||| | || | || ||| | || || Sbjct 195833 CATCCAGAAAGAATCTACTTTGCATTTGGTATTGCGTCTGCG 195874 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| ||||| |||||||| ||| ||| ||||| ||||| || ||||| Sbjct 195906 ACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCCGACACTATCGAAAACGTCAAAGCT 195965 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| || ||||| ||| || || ||| | | ||||||||||| || Sbjct 195966 AAA-ATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAACGCTTGATCTTCGCCGGCAA 196024 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||||||||||||||| | || ||| | || || ||| |||||||||| |||||| | || Sbjct 196025 GCAGTTGGAAGATGGTCGTACATTGTCTGACTATAACATCCAGAAAGAATCTACTTTGCA 196084 Query 206373 CCTTGTTTTGAGACTTCG 206390 | || ||| | || || Sbjct 196085 TTTGGTCTTGCGTCTGCG 196102 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||| ||| ||| || || | ||| Sbjct 196125 AAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCCGATACTATTGAAAAC 196184 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || || ||| | | |||||| Sbjct 196185 GTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTC 196244 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||||||||| | || ||| | || |||||| |||| ||||| ||| Sbjct 196245 GCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAAGAATCT 196304 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | || ||| | || || Sbjct 196305 ACTTTGCATTTGGTCTTGCGTCTGCG 196330 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| |||||||| ||| ||| || || | ||| Sbjct 196353 AAGACCCTGACTGGCAAAACCATCACATTGGAAGTTGAACCTTCCGATACTATTGAAAAC 196412 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||| ||| || || || | | |||||| Sbjct 196413 GTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAGCAGCGTTTGATCTTC 196472 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||||||||| | || ||| | || || ||| |||||||||| ||| Sbjct 196473 GCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAACATCCAGAAAGAATCT 196532 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | || ||| | || || Sbjct 196533 ACTTTGCATTTGGTCTTGCGTCTGCG 196558 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | || | |||||| |||||||||| |||||||||| ||| || Sbjct 196102 CGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTA 196043 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||| |||||| ||||||||||| | ||||||||| Sbjct 196042 CGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGA 195998 >seq10951 Length=171266 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || ||| || ||||| || || || ||||||||||| || || Sbjct 140007 AAAATG---CAGATCTTCGTCAAGACCCTCACCGGTAAGACCATCACTTTGGAGGTCGAG 139951 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| ||||| | ||| || ||| ||||| ||||| || ||||| || || Sbjct 139950 CCTTCCGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCA 139891 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | ||||||||||| || || ||||||||||| | || ||| |||| Sbjct 139890 GATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGAC 139831 Query 206344 TACAACGTCCAGAAAGAGTCTAC 206366 |||||| |||| || || || || Sbjct 139830 TACAACATCCAAAAGGAATCCAC 139808 >seq7037 Length=35088 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || || || || || || || || | || || || |||||| Sbjct 23136 CAGATATTTGTTAAGACCCTTACGGGCAAGACTATAACCCTAGAGGTTGAGCCATCTGAC 23077 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || |||||| || ||||| |||||| ||||| || Sbjct 23076 ACTATCGAAAATGTCAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCACCGGATCAACA 23018 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | || || |||||||| || ||||||||||| | || ||| | ||||| || | Sbjct 23017 ACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGATTATAATAT 22958 Query 206352 CCAGAAAGAGTCTACT 206367 ||||| ||||||||| Sbjct 22957 TCAGAAGGAGTCTACT 22942 >seq9744 Length=475756 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||||||||||||||| ||| || ||| | ||| || ||| Sbjct 178284 ACTGGAAAGACCATCACTTTGGAAGTGGAGCCTTCGGATACAATTGAAAATGTCAAGGCC 178225 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || || || || ||||||||| || ||| || | | || ||||| || || Sbjct 178224 AAAATCCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGCGTTTGATTTTCGCTGGCAAA 178165 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 ||| | |||||||| | || || | ||||||||| | ||||| ||||| ||| Sbjct 178164 CAGCTAGAAGATGGTCGTACCTTATCTGATTACAACATTCAGAAGGAGTCAACT 178111 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAA-GCA 206252 || || || || || || ||||| |||||| ||| || ||| | ||| ||||| || Sbjct 179652 ACCGGCAAGACAATTACATTGGAGGTGGAACCTTCGGATACAATTGAAAATGTAAAAGCT 179593 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| ||||| || || ||||| ||| || ||| || | | || ||||||||||| Sbjct 179592 AAA-ATTCAGGACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTAATTTTCGCCGGAAA 179534 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 || ||||||||||| | || || | ||||||||| | || || ||||| ||| Sbjct 179533 ACAATTGGAAGATGGTCGTACCTTATCTGATTACAACATTCAAAAGGAGTCAACT 179479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181510584227527