Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq10186 109 5e-19 seq9744 84.2 2e-11 >seq10186 Length=270785 Score = 109 bits (120), Expect = 5e-19 Identities = 440/681 (65%), Gaps = 23/681 (3%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| || || || || | ||| || ||||| || |||| | ||| |||||||||||||| Sbjct 27530 CACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTCTT 27589 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | || || ||||||||| |||||| || | ||| || || | || ||||| Sbjct 27590 GAGGCCAGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTCGGC 27649 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 ||| | ||| | |||||| |||||||||||| | | || || || |||||||| || Sbjct 27650 TACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCAT-TT 27708 Query 136818 CAATAGTACTTTTTGC-TTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGA---CATTGG 136873 || || | || | |||||||||| ||||||| | ||||| || | ||| Sbjct 27709 TGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTTTG- 27767 Query 136874 GCGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGAT 136933 ||||| | || ||||| |||| ||| || | | ||||| || || | | || Sbjct 27768 --GGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 136934 CAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGAT 136993 | | | | || | | | | || | ||| ||||| || | | | Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 136994 ATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGT 137053 |||| || || || || | ||| ||| | ||| ||| | ||||| || ||||| | Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 137054 TGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCC 137113 | ||||||| |||||| || || | || || ||||| || | | |||||| || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 137114 GTAAACCGTGTACGGCCAATTGTTG-CTTGAGCTCTTTCCAGTTCCACAGATTGTTCGAT 137172 | | ||| || || ||||| | | ||| || || ||| | ||||| | | Sbjct 28006 GCACACCATGCTTGG-CAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCG-----G 28059 Query 137173 TGGGT--TATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 ||||| | ||||||||| |||| |||| | || || ||| |||| || | | || Sbjct 28060 TGGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGAT 28119 Query 137231 AAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACTCTGGACT--AGTGCGCCAT 137287 | | ||||| | || | | | || ||||||||| | |||| || | || |||| Sbjct 28120 ATGTTTCATAGGGACCAT-CTTTCTCAGCCAGTTCACAA--CTGGCCTCCAAGGCACCAT 28176 Query 137288 AGTAAATAGTTTCGGAGATTT 137308 ||||||| |||||| | |||| Sbjct 28177 AGTAAATTGTTTCGAAAATTT 28197 >seq9744 Length=475756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||||| || ||||| | ||||| | ||||| || |||| | Sbjct 178992 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGA-GCCATC 178934 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||||| ||||| || ||||| || || || || Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| || || |||||| | ||||||| | | | ||||||||| Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||| || ||||| || | ||||| || Sbjct 178813 TATTCAGAAGGAATCAACTCTGCATTTGGT 178784 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || ||||| | ||||| | ||||| || |||| | Sbjct 179220 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGA-GCCATC 179162 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||||| |||||||| || || || || || || Sbjct 179161 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACCA 179102 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| || |||||||| || ||||||| | | | | ||||||||| Sbjct 179101 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTACAA 179042 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||||||| || || || | ||||| || Sbjct 179041 TATTCAAAAGGAGTCAACTTTGCATTTGGT 179012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444980416887840