Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq10151 95.1 2e-13 seq11462 91.5 2e-12 seq10906 91.5 2e-12 seq10162 91.5 2e-12 >seq10151 Length=262553 Score = 95.1 bits (104), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| ||||||||| || |||||||| || |||| || || | Sbjct 243201 CTCCTCCAAGGCCATGAGCATCATGAACAGTTTCGTCAACGATATCTTCGAACGTATTGC 243260 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | |||| ||| ||| |||| | || |||||||||| || ||| || || || || Sbjct 243261 CGCCGAAGCCTCTCGTTTGGCCCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAAT 243320 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||||||||| || || | ||| ||| ||| |||| | |||| ||||| || || Sbjct 243321 CCAGACCGCCGTCCGTCTATTGTTGCCCGGTGAATTGGCTAAGCACACCGTCAGTGAAGG 243380 Query 725138 CACCA 725142 |||| Sbjct 243381 TACCA 243385 >seq11462 Length=102054 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| ||||||||| || | |||||| || |||| || | | Sbjct 40042 CTCCTCCAAGGCCATGAGCATCATGAACAGTTTCGACAACGATATCTTCGAACGTACTGC 40101 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | |||| ||| ||| |||| | || |||||||||| || ||| || || || || Sbjct 40102 CGCCGAAGCCTCTCGTTTGGCCCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAAT 40161 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||||||||| || || | ||| ||| ||| |||| | |||||||||| || || Sbjct 40162 CCAGACCGCCGTCCGTCTATTGTTGCCCGGTGAATTGGCTAAGCACGCCGTCAGTGAAGG 40221 Query 725138 CACCA 725142 |||| Sbjct 40222 TACCA 40226 >seq10906 Length=151380 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||| | ||||| || || ||| |||| | ||| ||| |||| || Sbjct 123572 ATTTACAAAGTGTTGAAGCAAGTCCATCCCGACACCGGT-----ATC-TCCTCCAAGGCC 123519 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||| || |||| || || | | |||| ||| | Sbjct 123518 ATGAGCATCATGAACAGTTTCGTCAACGATATCTTCGAACGTATTGCCGCCGAAGCCTCT 123459 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || |||||||||| | | ||| || || || ||||||||||||| Sbjct 123458 CGTTTGGCCCACTACAACAAGCGCTAGGCCATCACCAGTCGGGAAATCCAGACCGCCGAC 123399 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| ||| |||| | ||||||||| || || |||| Sbjct 123398 GGTCTATTGTTGCCCGGTGAATTGGCTAACCACGCCGTCAGTGAAGGTACCA 123347 >seq10162 Length=1180275 Score = 91.5 bits (100), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||| | ||||| || || ||| |||| | ||| ||| |||| | Sbjct 56898 ATTTACAAAGTGTTGAAGCAAGTCCATCCCGACACCGGT-----ATC-TCCTTCAAGGCT 56845 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||| ||| || |||||||| || |||| || || | |||||| ||| | Sbjct 56844 ATGAGCATCATAAACAGTTTCGTCAACGATATCTTCGAACGTATTGCCACCGAAGCCTCT 56785 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| | || |||||||||| || ||| || || || |||||||||||||| Sbjct 56784 CGTTTGGTCCACTACAACAAGCGCTCAACCATCACCAGTCGGGAAATCCAGACCGCCGTC 56725 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| ||| |||| | ||| |||||| || || |||| Sbjct 56724 CGTCTATTGTTGCCCGGTGAATTGGCTAAGCATGCCGTCAGTGAAGGTACCA 56673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175835191194894