Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq9744 125 6e-24 seq7037 98.7 9e-16 seq9576 84.2 2e-11 seq9574 82.4 7e-11 >seq9744 Length=475756 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | || |||||||| || || ||||||||||||||||||||| | Sbjct 179448 TTCCACCACGGAGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAG 179507 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || |||| || || || || || || || ||||| ||||| | || Sbjct 179508 ATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAG 179567 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| || ||||||||| ||| ||| || || | | || | | || || | |||| Sbjct 179568 GAATGCCTTCCTTGTCC-TGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCC 179626 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||||| || || || || || ||||| || ||||| || ||||||||| Sbjct 179627 ACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATT 179677 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||||| || || |||||| |||||||||||||| | Sbjct 178080 TTCCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAG 178139 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || || ||||| || || || || ||||| ||||||||||| | | Sbjct 178140 ATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 178199 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| ||| ||| || ||| | | || | | || || | |||| Sbjct 178200 GAATTCCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCA 178259 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || |||||||| || || || || ||||||| Sbjct 178260 CTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATTC 178310 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||||| || || |||||||||||| |||||||||| Sbjct 178992 TTCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGG 179051 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || || ||||| || || || || ||||| ||||||||||| | | Sbjct 179052 ATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 179111 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || || ||| ||| || ||| | | || | | || || | |||| Sbjct 179112 GAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCA 179171 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || |||||||| || || || || ||||||| Sbjct 179172 CTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCATTC 179222 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||||| || || |||||||||||| |||||||| | Sbjct 179220 TTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAG 179279 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || || | || || || || || ||||| ||||||||||| | | Sbjct 179280 ATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 179339 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||| ||| ||| | | || | | || || | || | Sbjct 179340 GAATACCTTCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTA 179399 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| || || |||||||| |||||||| || || || || ||||||| Sbjct 179400 CTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATTC 179450 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || ||||||||| || || ||||| | ||| || || | || || Sbjct 178328 ACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGACAACGTACGACCATCTTCT 178387 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || || || ||||| ||||||||||| | |||| | ||||| || | Sbjct 178388 AGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGG 178447 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | || | | || || | ||||| |||| ||||| || || Sbjct 178448 ATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTCTTT 178507 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||||||| || || || || ||||||| Sbjct 178508 CCAGTCAAAGTCTTGACGAAAATTTGCATTC 178538 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || |||||||||||| |||||||||| ||||| || | || || Sbjct 178556 ACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCT 178615 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | || || || || || ||||| ||||||||||| | |||| | ||||| || | Sbjct 178616 AATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGG 178675 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 || || ||| | | || | | || || | || || |||| || || |||||| Sbjct 178676 ATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTTA 178735 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||||||| || || || || ||||||| Sbjct 178736 CCTGTCAAAGTCTTAACGAAAATTTGCATTC 178766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| |||||||||| |||||| || | || || | || || || || || Sbjct 177549 TCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAA 177608 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||| ||||| | |||| | ||||| ||| ||| || ||| | | || Sbjct 177609 ATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATTTTGGCCTTGACATTT 177668 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | || || |||| || || |||||||| |||||||| || || Sbjct 177669 TCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACG 177728 Query 35726 AATATCTGCATTC 35738 || || ||||||| Sbjct 177729 AAAATTTGCATTC 177741 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||||| | || ||||| ||||| |||||||||| Sbjct 178764 TTCCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGG 178823 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || || | || || || || || ||||| ||||||||||| | | Sbjct 178824 ATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 178883 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||| || ||| || ||| | | || | | || || | |||| Sbjct 178884 GAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCA 178943 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| || || || ||||| ||||| || || || ||||||| Sbjct 178944 CTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATTC 178994 >seq7037 Length=35088 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || |||||||| | || |||||||| || ||| |||||| ||||| || ||||| | | Sbjct 22913 CCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGAC 22972 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | || |||| || || || ||||| || || || || || |||| ||| Sbjct 22973 AATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGA 23032 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| |||||| ||||| || | | || | | ||||| | || ||| Sbjct 23033 ATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAACC 23092 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || ||||| | || || |||||||||||||| Sbjct 23093 TCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCAT 23139 >seq9576 Length=1569244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || || || || || || ||||| | || || || | || || Sbjct 195634 ACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGATAATGTGCGTCCATCTTCA 195575 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| ||||| || | | || ||||| | ||||| || || |||||| || Sbjct 195574 AGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCC-TG 195516 Query 35648 ATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| |||| | | || | | || || | |||||||||| || || ||||| Sbjct 195515 AATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTTTT 195456 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 || || ||||| ||||| || ||||||||| ||| Sbjct 195455 GCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGT 195421 >seq9574 Length=1787140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 44106 GAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAA 44165 ||||||||| ||| |||||| |||||||| |||||| || ||| | ||| Sbjct 11171 GAGACGGCCCACACACATGATGACCTGTGGAACAGTGCCCAGTTGCAGCTGGTAAAGGAA 11112 Query 44166 GGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAA 44225 || |||||||| | |||||||||||||| |||||| || ||||||||||| ||| Sbjct 11111 GGAAAAATGCATGGGTTTTTGCGTATGTATTGGGCCAAGAAAATCTTGGAGTGGTCTGAA 11052 Query 44226 GATGCGCAAACCGCGCTCGTTCATGCCA-TCTATCTGAACGACAAGTACAGTTTGGACGG 44284 | ||| || | | ||| | |||| || || || || ||||||||||| || Sbjct 11051 TCACCAGAAAAGGCATTGGAAATTGCTATTCTA-CTAAATGATAAATACAGTTTGGATGG 10993 Query 44285 TCGCGACCCCAACGGGTACGTAGG 44308 | | || || ||||| || || || Sbjct 10992 TAGAGATCCTAACGGCTATGTGGG 10969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450678157393960