Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10186 580 2e-160 seq10162 322 7e-83 >seq10186 Length=270785 Score = 580 bits (642), Expect = 2e-160 Identities = 1487/2234 (67%), Gaps = 40/2234 (2%) Strand=Plus/Plus Query 68367 ATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGT 68426 ||||| ||||||||||||| || || || ||||| |||| ||| ||||| || || Sbjct 27527 ATCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGT 27586 Query 68427 TTTCAGACCTAGACT-CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGAT 68485 || || || || || ||| |||||||| || || | ||| ||| | || | Sbjct 27587 CTTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTT 27645 Query 68486 CGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCA 68545 |||||| || ||||| | ||||||||| ||||||||||| || || | ||| || |||| Sbjct 27646 CGGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCA 27705 Query 68546 TTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCAT 68605 |||| || | |||| | ||||||||||| || || ||| || | ||| || | Sbjct 27706 TTTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTT 27765 Query 68606 CTGGAAG--GCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCT 68662 |||| | || ||||||| || || |||| || || || ||||||| || | Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 68663 CATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAA 68722 | |||| |||||| | || || ||| | | || | ||| |||| || || | || Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 68723 ATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCAT 68782 |||| || || | || | ||| ||||||||||| || || || || | ||||||| Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 68783 TATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTC 68842 |||| |||| ||| || || || || ||||| ||||| ||||| | | || || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 68843 TAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTA 68902 | |||||| | ||||| | ||||| | ||||||||| | || | |||| Sbjct 28006 GCACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTA 28065 Query 68903 CAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTT 68962 | |||||| | ||| || || ||||| || || ||| || || |||||||| Sbjct 28066 CTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTT 28125 Query 68963 CATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTG 69022 |||| || || || | ||||| ||||||||||| ||||| || ||||| || ||||||| Sbjct 28126 CATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTG 28185 Query 69023 TTTCGAAAATCTTCTTATTGAGATCTTGT--GCTTCTAGACTATCGAATGGATAATGTAA 69080 |||||||||| | || ||| || ||||| || | | ||| || | || ||| | | Sbjct 28186 TTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGGGGTAACGCAT 28243 Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 ||||| | | || || || || || || |||||||| || || | ||||||| |||| Sbjct 28244 CAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATT 28303 Query 69141 TGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC 69199 || ||||| ||||| || | ||||| || || || || || |||||||| ||||| | Sbjct 28304 GGA-CTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGC 28362 Query 69200 GGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCAT-CTATA--- 69255 | || || || |||| | ||| | ||| |||||| | |||| | || | Sbjct 28363 GCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATA-CGTCTTTTCTGGAGTC 28421 Query 69256 ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315 ||||||||||| || | || || | |||||||||||| | |||| || | Sbjct 28422 ACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGAG 28481 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 || | | || |||||||| | ||| || |||||||| || || | |||||| |||||| Sbjct 28482 TACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTA 28541 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 ||||| || || ||||| ||| | || ||| | || || || ||||| | || | | Sbjct 28542 CTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCT 28601 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC----TC 69491 ||||| || | ||| | | ||| || || |||||||| | | |||| || Sbjct 28602 TCGATGATGGCAAACCATA-GCGCCT-GCGCTT-TTACGGTCCTATTG-GCTTTGCCTTC 28657 Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 ||||| |||| | || || ||| ||||| |||||||| ||||| | | || || Sbjct 28658 CTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGG 28717 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 ||||| | ||||||||| | ||||| | ||| || | || || |||||||| || Sbjct 28718 ACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAG 28777 Query 69612 ATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 ||||||||||||||| || || ||| |||||||||| | || ||||| || ||||| | Sbjct 28778 ATCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGTGT 28836 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 |||| || | ||| | |||||| | |||||| |||||||||||||| | ||| || || | Sbjct 28837 TTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAA 28896 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || ||||| || || ||||| | || | ||| || || | || | Sbjct 28897 ATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACCC 28956 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 | | ||| || | | |||||| ||| | ||||| || || | |||| || |||| | | Sbjct 28957 TTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGG 29016 Query 69851 CGCGAATATTACTAAT--AGATAGA--CCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 |||| ||| ||| | || || || |||||||| ||| ||| || || | || Sbjct 29017 CGCGTATA----CAATGGACATTGATGCCAATTCCTCCGGCCGATTTCGATATCATGGCG 29072 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || ||| | | | | ||||| || || |||| | | |||| | || || ||| Sbjct 29073 CACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAA 29132 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || |||| || | | | || | ||| ||||| || ||||| || ||||| Sbjct 29133 CAAGACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTA 29192 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATG 70085 || | ||| ||||||| ||||| || || || || | || || || ||| ||| Sbjct 29193 AAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCAC-CATG 29251 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | || |||||||| | ||| || ||||| | || | | || ||| || Sbjct 29252 TATGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCAT 29311 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||||||| || || |||||| |||||||| |||||||| ||||| || || | Sbjct 29312 TTTCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACG 29371 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGT 70265 || |||| ||| | ||||| || ||| || || | || | || |||| | Sbjct 29372 ATCATAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAA-TGA 29429 Query 70266 AGGT--GAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCT 70323 | | || || || || | || | || ||| | ||| ||| | ||||| Sbjct 29430 AACTCCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCA 29489 Query 70324 TCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTG 70383 || || || || | || || |||||||| || | ||| |||| || || | | Sbjct 29490 CTGATCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGG 29549 Query 70384 GCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCT 70443 ||||| || | |||||| |||| ||| | || || |||||| || ||||||| || Sbjct 29550 GCTGCCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCC 29609 Query 70444 AACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCT 70503 || |||| |||| | || || || || ||| | || | ||| || | | || | Sbjct 29610 AAATTATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTT 29669 Query 70504 ATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGAT 70563 || | |||||| | || || | |||| ||||| || | ||| || |||||| Sbjct 29670 ATGGCAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGAT 29729 Query 70564 GTAATTTTATCAAA 70577 || || || || || Sbjct 29730 GTGATCTTGTCGAA 29743 >seq10162 Length=1180275 Score = 322 bits (356), Expect = 7e-83 Identities = 580/838 (69%), Gaps = 16/838 (2%) Strand=Plus/Plus Query 39320 CCCATTTTTTGGTATTCACCAAC---GCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 ||||||||| |||||||||| || ||||| | || ||||| ||||| || |||||| Sbjct 71332 CCCATTTTT-GGTATTCACCCACTTTGCGTT---CAAAGAAATTTGTTTTACCATCCAAT 71387 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAA-ATCCTAA 39435 || || |||||||||| || ||||| | | ||| || |||| || |||| || Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCC-AA 71446 Query 39436 TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCAT 39495 ||| | || | ||| ||||||||||| || ||| ||| | |||||||||||| Sbjct 71447 TTCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCAT 71506 Query 39496 TCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTC 39555 ||| || | ||| ||| ||||| || ||||| || || | ||| || | ||| || || Sbjct 71507 TCCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATC 71566 Query 39556 TGTTATTAT--CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATT 39613 | || || | || ||| || | || ||| |||| | || ||| ||||| Sbjct 71567 TCGGATGATTTCAATAATACGTTCT--TTGCTGGGTTTCTGCACCAGATATTTGAACATC 71624 Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 | ||| || |||||||| | ||| || || | || ||||| || || ||||| Sbjct 71625 AGTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTC 71684 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 | ||||||||||||||||| || || |||||||| |||| |||||| || || Sbjct 71685 AAGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAA 71744 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT--ATCATTAT 39791 || || || || || || ||||| |||| || | ||||| || | | || | || Sbjct 71745 AATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGAT 71804 Query 39792 GTA-TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | | |||| | |||||||| || |||||||| || ||||||||||| || ||| Sbjct 71805 GAAATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCA 71864 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 || || ||||| | || ||| | || |||| |||||||| || | | ||||||| Sbjct 71865 TTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATAC 71924 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 ||||| || || | ||||| || || || || || || || || || | ||||| || Sbjct 71925 ATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTC 71984 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | ||| |||||| | || | ||| | ||||||||||| || || |||||| ||| Sbjct 71985 ACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCG 72044 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAG 40090 || ||||| |||| ||||| || ||||| ||||| | ||| ||| ||| ||| Sbjct 72045 GCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAA 72104 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| | | ||||| || | ||| |||||||| |||||||||| || |||||||||| Sbjct 72105 TCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686732891242680