Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10162 309 2e-79 seq10820 210 2e-49 seq9828 132 4e-26 >seq10162 Length=1180275 Score = 309 bits (342), Expect = 2e-79 Identities = 569/816 (70%), Gaps = 30/816 (4%) Strand=Plus/Minus Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810 ||| |||| ||||||||||||| |||||||||||| | | ||||||||| | ||||| Sbjct 72160 GCAGAGGCTTCATTTTGGACAGTGGAAGAAGTTGATCTCTCCAAAGACTTAACTGATTGG 72101 Query 43811 ATTGCATTAAAACCACAAGAAAAAC-ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGC 43869 | ||||| | |||| || | |||| |||||| ||| |||| ||||| || || Sbjct 72100 GATAGATTAACAG-ACAATGAACGCTATTTCATATCTCATGTTCTGGCCTTTTTCGCCGC 72042 Query 43870 GAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACC 43929 || || || |||||||||||||| ||| || || ||||||| || ||| | | Sbjct 72041 CTCTGATGGTATTGTCAATGAAAATTTAGTTGAACGTTTCTCGCAAGAGGTGCAAGTGAC 71982 Query 43930 AGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 |||||| || || || ||||| || ||||||||||| |||||| |||| || |||||||| Sbjct 71981 AGAAGCCCGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTTCACTCCGAAATGTA 71922 Query 43990 CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAA 44046 ||| ||||||| ||||| ||||| || || | ||| | | | || | || || Sbjct 71921 TAGTATTCTGATCGATACATACATTAAGGA---CCGCGATCAACGTGAATATCTTTTCAA 71865 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 ||| || |||||| | || || |||| | || || || |||||| | |||||| Sbjct 71864 TGCCATTGAAACAATGCCAGCCGTTAAGAAGAAGGCCGATTGGGCCTTGTCATGGATTTC 71805 Query 44107 TTCA-AAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 ||| ||| | | |||||||||||| || | |||||||| | || || || || | Sbjct 71804 ATCAGAATCGGCTAATTTTGGAGAACGTGTTATTGCGTTTGCTGCCGTTGAGGGTATAT- 71746 Query 44164 CTTTTCAG-GATCG-TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 ||||||| | | | ||||| |||| |||||| | |||||||| ||| | |||||||| Sbjct 71745 -TTTTCAGCGGTAGTTTTGCCTCCATCTTTTGGCTTAAGAAACGTGGTCTAATGCCTGGC 71687 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| || || ||||| || || ||||| |||||||| ||||| |||||||| Sbjct 71686 TTGACATTCTCCAATGAATTGATCTCGCGTGACGAAGGCTTGCATTGTGATTTTGCCGTA 71627 Query 44282 TTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTG 44339 || | | |||||| || | || || || || |||| |||| || || Sbjct 71626 CTGATGTTCAAATATCT-GGTGCAGA-AACCCAGCA---AAGAACGTATTATTGAAATCA 71572 Query 44340 TTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACC-TGTAAATTTA 44398 | ||| || ||||| || ||||| ||||| | || ||| | || ||| |||||| Sbjct 71571 TCCGAGATGCTGTAAAAATTGAACAGGAATTCCTAACTGAAGCTCTGCCATGT-AATTTA 71513 Query 44399 ATAGGAATGAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTA 44455 || |||||||| |||| || ||| |||||||||||| |||| |||||| | Sbjct 71512 ATTGGAATGAATTGTGAA---TTAATGTCGGAATATATTGAATTTGTTGCCGATCGTCTG 71456 Query 44456 CTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAA 44515 || | ||| ||| | | ||| ||| | | |||| || || || |||||| Sbjct 71455 CTGGTTGAATTGGATGTTGGCAAAATCTACAATACCAAAAATCCTTTCCCCTTCATGGAA 71396 Query 44516 AATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAA 44551 | ||||| ||||| || |||||||| || |||||| Sbjct 71395 ATGATTTCATTGGATGGTAAAACAAATTTCTTTGAA 71360 >seq10820 Length=150301 Score = 210 bits (232), Expect = 2e-49 Identities = 481/713 (67%), Gaps = 16/713 (2%) Strand=Plus/Plus Query 40719 TTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAG 40778 ||||||| || ||| || ||| |||||||||| | || || |||||||| ||| Sbjct 111648 TTTTGGAGAGCAGTTGTTGAGGAATTGTTATGGTTCACACGTGGCTGCACTAATGCAAAG 111707 Query 40779 AAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCT 40838 ||||| || | | | ||||| ||| ||| ||||| || || ||| | Sbjct 111708 GAATTACAGGACAAAAATATCCACATCTGGGATGGTAACAGTACTCGCGAATTTTTAGAT 111767 Query 40839 A-GCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTC 40897 | || | | ||||| ||| | | || || ||||| ||||| || |||||||| || | Sbjct 111768 AAGCTTGGCTTTACA-GATCGTAAAGAGGGCGATCTGGGTCCGGTATATGGATTCCAATG 111826 Query 40898 GCGACATTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATACCAATAAAGGAATGG 40956 ||| |||||||| ||||||||| |||| ||| || ||||||||||||| | ||||| | Sbjct 111827 GCGTCATTTTGGTGCAAAATATCGCACT-TGTGACGATGATTATACCAATGAGGGAATAG 111885 Query 40957 ATCAA-TTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATA 41015 | ||| || || || || | || || | |||||||||||| |||| || ||| Sbjct 111886 ACCAACTTGCAAAT-GTAATCCACACAATACGCACAGATCCCGATAGCAGACGCATTATA 111944 Query 41016 TTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTA 41075 || ||| |||||||| | || ||||||| ||||| | ||||| || |||| || Sbjct 111945 ATGACCGCTTGGAACCCTAGCGATATACATTTAATGGCTCTACCACCATGCCATT--GTA 112002 Query 41076 TG--TCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTG 41133 || ||| ||||| || |||| |||| |||| ||||| || ||| | | || Sbjct 112003 TGGCTCAATTTTATGTGGCAAATGATGAATTGTCCTGTCAGCTGACCCAACGTAGTGCTG 112062 Query 41134 ACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTG 41193 | |||||||| || || || || || || || ||| ||| || | || |||||||||| Sbjct 112063 ATATGGGACTGGGCGTTCCATTCAATATCGCCTCTTACGCTTTGTTAACTTATATGATTG 112122 Query 41194 CACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTT 41253 | ||| | || | | ||||| || || ||| ||||| | || || ||| |||| | | Sbjct 112123 CCCACATAACAGGTCTTAAACCAGGCGATTTTATTCACTCATTGGGTGATACACATGTCT 112182 Query 41254 ACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAA 41313 | | |||||| | || || |||| || || ||| ||| |||| | ||||||| Sbjct 112183 ATTTAAATCACGTTGAACCATTAAAGGAGCAGTTGAAACGTGAACCACGTAAGTTTCCAA 112242 Query 41314 CGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTG--- 41370 || | || || || ||| | ||||| || || |||| ||||||| Sbjct 112243 AATTAATAATCAAGCGTAAAGTTACGGATATTGAGGACTTCAAATTCGAAGATTTTGAAA 112302 Query 41371 TCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGTATGA 41423 | ||| || || || ||||| || ||||| || ||||| ||| | || ||| Sbjct 112303 TTGTTGGC---TATAACCCGTATCCGAAAATTCATATGGAAATGGCCGTTTGA 112352 >seq9828 Length=397621 Score = 132 bits (146), Expect = 4e-26 Identities = 203/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || ||| ||| || ||| || || || ||| ||||||||| |||||||| Sbjct 147727 AATTGGTGGTTTGGATAAGGAATTTAATGCTATATTCCGTCGAGCATTTGCATCGCGTGT 147668 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 || | |||| | ||| |||||||||| || || || || || || | || || Sbjct 147667 CATTCCACCAGAAATTATTGAACAATTGGGCTGCAAGCACGTCAAGGGTATTCTACTCTA 147608 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTAC 19418 ||| || || ||| ||| ||||| || || || | || || ||||| ||| | | Sbjct 147607 TGGTCCTCCTGGTACTGGTAAAACTTTGATGGCTCGGCAAATTGGTAAAATGTTAAATGC 147548 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | | |||| ||| ||||| ||||||||| | || || |||||||||| ||| |||| Sbjct 147547 ACGAGAACC---CAAGATTGTCAATGGTCCTCAGATTTTGGATAAATATGTGGGTGAATC 147491 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 || | ||| | || ||||||||||| || || |||||||| |||| Sbjct 147490 CGAGGCCAATATTCGTCGTTTGTTTGCCGAGGCCGAAGAAGAGGAAAA 147443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397356761074435