Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10186 176 6e-39 seq9983 111 2e-19 seq18266 96.9 4e-15 >seq10186 Length=270785 Score = 176 bits (194), Expect = 6e-39 Identities = 899/1420 (63%), Gaps = 24/1420 (2%) Strand=Plus/Plus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 |||||||| ||| ||||||| ||| | | ||| || || | |||||| || Sbjct 27873 TTGACAATATTAAATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGC 27932 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 ||||| ||||||||||||||| || || || || || || || ||||||||||| | Sbjct 27933 TCAAATGATTCATTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAG 27992 Query 110789 A--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | || || ||| || | ||| | || || |||| || || |||| || Sbjct 27993 AGCAATGA--GTTGCGCACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCC 28050 Query 110847 AGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAG 110906 | | ||| | | | |||||| ||| ||||||| | |||| | | || Sbjct 28051 ACAAGTCGGTGGGTACTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGC 28110 Query 110907 AACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 110966 ||| | | |||||||||| ||| | ||||||| |||||| || ||||||| || Sbjct 28111 TACCGGGATATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGG 28170 Query 110967 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAA 111026 | | || || ||||| || || | ||| | || | ||| | || ||| Sbjct 28171 CACCATAGTAAATTGTTTCGAAAATTTGCTGATTAAGCTTGTAGGCCTGTTCACTTTCAT 28230 Query 111027 ATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTC 111086 | | ||| || || ||| | || |||| |||||| ||||| | |||||| || | Sbjct 28231 AGGGGTAACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGAC 28290 Query 111087 TGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 |||| |||||| ||||||| || | | ||||| | || ||||||||| | Sbjct 28291 GATGTCTCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTT 28350 Query 111147 GGTTTAGATTTTTGGTAACAATCTTTGTGAT-TTCATGAAGTTTTTCATAATCAAAAGTG 111205 || ||||| ||||||| ||| | | ||| | || || || | ||||| | || Sbjct 28351 TATTGAGATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGA-AATCATACGTC 28409 Query 111206 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 111265 | ||| | | ||| || | || || || |||||||| ||||| || | Sbjct 28410 T---TTTCTGGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATT 28466 Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 ||||| | | |||||| | |||||||||||| || ||| | || ||||| || Sbjct 28467 TCATCAGGTGCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCA 28526 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | ||| | ||| |||||||| ||||| || || ||| | ||||| || || || || Sbjct 28527 ATATTTTGTTGATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCT 28586 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT 111444 || ||| || | || || || || ||| | | | ||| || ||| | || Sbjct 28587 GTTTCCACTTGGGCTTCGATGATGGCAAACCATAGCGCCTGCG-CTTTTACGGTCCTATT 28645 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTC 111504 ||| || ||| ||||| ||| ||| || |||||| || || ||| | | || Sbjct 28646 GGCTTTGCCTTCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATC 28705 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCG 111564 || || || |||| |||||| | || ||||| | ||| || || || || Sbjct 28706 TTGTAGCCCCGGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACG 28765 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 |||||| || || || |||||||| |||| | || |||||||| ||| |||||| Sbjct 28766 CTTCATAAACAGATCGGGAATCCAAAGGGCGTAGAAAAGATCTCTGGCACGATGCTCTTC 28825 Query 111625 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | ||| ||| ||| || | ||||| | ||||||| |||||||| || | Sbjct 28826 CTTGCCTGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAA 28885 Query 111685 ATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 ||||| || | | || | || | |||| | |||||| ||||| || || Sbjct 28886 ATAGATGGCAAATGCGCCAGGACGTTTGCCGCC-ACCTTGATCGACATAACGTGCAACAT 28944 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800 ||| ||||| | | ||| || | | ||||| ||| ||||| || || |||| Sbjct 28945 TGTTGAATACCCTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAG 29004 Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860 || | ||||| | | | ||||| | || ||||| || || ||| | || || | Sbjct 29005 AAGTTCCCTTGGCGCGTATACAATGGACATTGATGCCAATTCCTCCGGCCGATTTCGATA 29064 Query 111861 T--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 | | |||||| | | ||| || | | |||| | || || || || ||| Sbjct 29065 TCATGGCGCACTGTTCAACAGACTTGAAAA--TACCTTCAATCGAATCAGCCACCATGGT 29122 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCATTGAAGAGGGTTGGT 111976 | ||||| ||| |||| ||| || |||||| ||||| || || ||||| Sbjct 29123 CAGGAGGAAACAAGACGACAGCTGGGGGAGATTGGTGG--CAGCAGCAAATAGAGTTGGA 29180 Query 111977 GTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036 | || ||| | || || || || | | || ||| ||||| | | ||| ||||||| Sbjct 29181 GAAGCATGAGTAAAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATG 29240 Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 ||||| || || ||||| | || || ||||||| ||||| Sbjct 29241 TCTTCACCATGTATGCCCACAGCCACACGCATGAGCATGT 29280 >seq9983 Length=370597 Score = 111 bits (122), Expect = 2e-19 Identities = 275/409 (67%), Gaps = 14/409 (3%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||| |||||||| || || | ||||| | ||| || ||||| || ||||| || || || Sbjct 243474 ATCGAAACGACCGGGACGTAAAAGGGCTTTATCCAGAATATCTACACGATTTGTAGCGGC 243533 Query 11512 AATAACCACAA---TGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 | || |||| || || |||| || |||||||| || || |||||||| Sbjct 243534 CAGCACTACAACGTTGGTGGTGGTATTG---AAACCATCCATTTCAACCAGCAATTGATT 243590 Query 11569 AATTGTTTGTTCTCTCTCATCAT--TTGCTGGCATACCACCAGC-ACTGCGTTGCTTGCC 11625 | ||| |||||| || ||| | || || | || || || |||| || Sbjct 243591 CAATGT--GTTCTC-CTGTTCAGAGTGGCCACCAAAGGACTTGCCACCACGTTTACGACC 243647 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 || |||||||| ||||| ||||| | ||| || || ||||| ||||| || |||| Sbjct 243648 AACGGCATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGCAAA 243707 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 | |||||| || | | | ||| ||||| ||||||||||||| ||| | || | |||| Sbjct 243708 CATATCGCGGACACGTGATGGACCAACACCCACAAACATCTCCAAAAACTCTGAGCCAGA 243767 Query 11746 G-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 | || | |||||| || ||||| | |||||| || | || ||| | | || || | Sbjct 243768 GACAGT-GATGAAAGGCACATTGGCTTCACCGGCAGTAGCCTTGGCCAACATAGTTTTAC 243826 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||| || || || | || | ||||||| ||| || || ||||| Sbjct 243827 CCGTGCCGGGTGGTCCAGTCAGCATGGCGCCTTTGGGAATTTTAGCACC 243875 >seq18266 Length=950389 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 182676 GCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCA 182735 || || ||||||||| ||||||| || | ||| || ||||| || || ||||||| Sbjct 752982 GCCTCACGAACATTCAACAATTTACCACGCAATGGAAATACACCATAAAAATTACGACCA 752923 Query 182736 ACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGA 182795 | ||| ||||| | || || || | ||| || || |||||||| |||| ||| ||| Sbjct 752922 ATAACACCAAGACCAGACACAGCCAGAGATTTGGCTGAGTCACCCTCAGTGAGAATTAGA 752863 Query 182796 GTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCG 182855 |||||| | || | | ||| || || | ||| || || ||||||||||| ||||| Sbjct 752862 GTACACATGTAGGAATTTTTCGTGCCAGCTTCGTTGGCATCCTCCAACTTGGGTATACCC 752803 Query 182856 GTAATTTTGGA 182866 | ||||| || Sbjct 752802 TTGATTTTTGA 752792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627871168855200