Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18266 102 1e-16 seq9983 91.5 2e-13 >seq18266 Length=950389 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||| ||||||||| | | ||| || || |||||||| | ||||| || | ||||||||| Sbjct 753965 ATCCTTGCCACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGATATT 753906 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 || ||||||| |||| | |||||| || ||||| || || || ||||| || |||| Sbjct 753905 ATTCGAACCCACATAGTTTTGGGCCAAATTAACAATGGTCATTTGC-AGGGATACCTCAC 753847 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCAC 179210 |||||||||| || ||| | || || || Sbjct 753846 CGTGATGGTAGGCAGACATTTCAGCAAC 753819 >seq9983 Length=370597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||| ||||| ||||||||||||||||| | || || || ||||| |||||| | | Sbjct 243645 ACCAACGGCATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGC 243704 Query 14296 AAAGATATCTCGCACTC-TCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 14354 ||| ||||| || || | | ||| ||| ||||||||||||||||||| ||| | | | Sbjct 243705 AAACATATCGCGGACACGTGATGG-ACCAACACCCACAAACATCTCCAAAAACTCTGAGC 243763 Query 14355 CGGA-ACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 | || ||| | |||||| || || || | |||||| || Sbjct 243764 CAGAGACAGT-GATGAAAGGCACATTGGCTTCACCGGC 243800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618276826475720