Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10186 158 1e-33 seq9983 98.7 1e-15 >seq10186 Length=270785 Score = 158 bits (174), Expect = 1e-33 Identities = 1025/1630 (63%), Gaps = 34/1630 (2%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| ||||| | || || ||||| |||||||||||| ||| | | |||| Sbjct 29280 ACATGCTCATGCGTGTGGCTGTGGGCATACATGGTGAAGACATTGATGCTGCCATCGAGA 29221 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | ||| || | | || || || || | ||| || | ||||| || || ||||| Sbjct 29220 CTTACAACTTGCTTTCGGAACGTTACTTTACTCATGCTTCTCCAACTCTATTTGCTGCTG 29161 Query 104349 GTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 |||||| ||||| |||| ||| ||||| | ||| || || || || Sbjct 29160 --CCACCAATCTCCCCCAGCTGTCGTCTTGTTTCCTCCTGACCATGGTGGCTGATTCGAT 29103 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGT 104464 | |||| | | || ||| | | |||||| | || || || | ||| || || Sbjct 29102 TGAAGGTA--TTTTCAAGTCTGTTGAACAGTGCGCCATGATATCGAAATCGGCCGGAGGA 29045 Query 104465 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 104524 ||||| || | ||||| | | | ||||| | || |||| || || ||||| Sbjct 29044 ATTGGCATCAATGTCCATTGTATACGCGCCAAGGGAACTTCTATTGCCGGCACTAATGGC 28985 Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584 ||| ||||| | | || ||| | | ||||| ||| || || ||||| || Sbjct 28984 ACATCCAATGGTTTAGTGCCCATGTTAAGGGTATTCAACAATGTTGCACGTTATGTCGAT 28925 Query 104585 CAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGA 104640 |||| | |||| | || | || | | || ||||| | || |||||||| |||| Sbjct 28924 CAAGGT-GGCGGCAAACGTCCTGGCGCATTTGCCATCTATTTGGAACCATGGCATTCGGA 28866 Query 104641 TATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCG 104699 ||| | ||||| | || || ||| ||| | || || || ||||| | | Sbjct 28865 TATTTTTGAGTTTTTGGATTTAAAGAAAAACACAGGCAAGGAAGA-GCATCGTGCCAGAG 28807 Query 104700 ATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA 104759 |||| |||| ||| || |||||||| ||||| || |||||| | || || |||| |||| Sbjct 28806 ATCTTTTCTACGCCCTTTGGATTCCCGATCTGTTTATGAAGCGTGTCGAAGAGAATGGCG 28747 Query 104760 ATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGT 104819 | ||||| || | |||||| |||| || || || |||| ||| || || | Sbjct 28746 ACTGGTCGCTAATGTGTCCACACAAATGTCCGGGGCTACAAGATGTGTGGGGAGACGAAT 28687 Query 104820 TTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTG 104879 ||||| |||||| ||| ||||| | ||||| || | | ||| || ||| | Sbjct 28686 TTGAAAAACTTTACGAAAAATACGAAAAGGAAGGCAAAGCCAATAGGACCGTAAAAGC-G 28628 Query 104880 CCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTT 104938 | | | | ||| || || || | | ||| || || || || || || ||||| Sbjct 28627 CAGGCGCTATGGTTTGCCATCATCGAAGCCCAAGTGGAAACAGGAACCCCTTATATGCTG 28568 Query 104939 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 104998 | ||||||||| || || | |||||||||||| | ||| | || |||||| | | Sbjct 28567 TTCAAAGACGCTTGCAATCGCAAGAGTAATCAACAAAATATTGGCACGATCAAATGCAGC 28508 Query 104999 AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 105058 ||| | ||||||||||| | || | | | ||||| | || || ||||| | Sbjct 28507 AATTTGTGTACAGAAATTGTTGAGTACTCGGCACCTGATGAAATTGCAGTTTGTAATTTG 28448 Query 105059 GCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAA 105118 || || || |||| | || |||| |||||| |||||| | ||||| | || || Sbjct 28447 GCCTCGATTTGTCTCAATATGTTTGTGACTCCAGA---AAAGACGTATGATT-TCAAGAA 28392 Query 105119 CTCCACGAA-GTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTT 105177 | | ||| || | || ||| || || || || | | | ||||| | || | Sbjct 28391 ATTGAAGAATGTGGCCAAGGTTGTTACGCGCAATCTCAATAAAATCATTGACATCAACTA 28332 Query 105178 TTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 || || | | || | || || ||||||||||| ||||| |||||| | ||||| Sbjct 28331 CTATCCATTGCCGGAAGCAAGAAAGTCCAATATGAGACATCGTCCCATTGGTATTGGTGT 28272 Query 105238 TCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAA 105297 || ||| |||| || | ||||| || || | | ||| || | || | Sbjct 28271 ACAAGGTTTCGCTGACACCCTAATTCTGATGCGTTACCCCTATGAAAGTGAACAGGCCTA 28212 Query 105298 GGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGA 105357 | | ||| || || || || || || || | | || | ||||| |||| || Sbjct 28211 CAAGCTTAATCAGCAAATTTTCGAAACAATTTACTATGGTGCCTTGGAGGCCAGTTGTGA 28152 Query 105358 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 105417 |||| ||| |||||||| |||||||| | | ||| || | |||| | Sbjct 28151 ACTGGCTGAGAAAGATGGTCCCTATGAAACATATCCCGGTAGCCCTGTAAGCAAAGGTAT 28092 Query 105418 GCTTCAATTTGATATGTGG--GAAGGTGAGACCAAGCTTC-ACTACGACTGGGAAGCTCT 105474 ||||| | |||||||||| || || ||| | | | | || |||| | || Sbjct 28091 TCTTCAGTATGATATGTGGAATAAAGT---ACCCACCGACTTGTGGGATTGGGCTGACCT 28035 Query 105475 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAAC 105534 |||| || || | ||| | || ||| | ||| | || |||||||| || Sbjct 28034 AAAGGCCAAAATTGCCAAGCATGGTGTGCGCAACTCATTGCTCTTAGCACCAATGCCTAC 27975 Query 105535 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACAT 105594 || || || || || || ||||||||||||||| ||||| |||||||| |||| || Sbjct 27974 TGCTTCTACAGCCCAGATTATGGGTAATAATGAATCATTTGAGCCCTACACATCGAATAT 27915 Query 105595 CTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGA 105654 || | | ||| | || || ||| |||||||| | ||| | | | || Sbjct 27914 TTACACACGTCGTGTACTCTCAGGTGAATTTAATATTGTCAATCACCATTTGCTCAAGGA 27855 Query 105655 CCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT---CTCATGGTGAAAGCGGG 105711 | | || ||| | | ||| | ||||||||| || |||| | ||| | Sbjct 27854 TTTGACCGAACTTGATTTGTGGGATGAAGATATGAAGAATAAGATCAT--TTCTAGC-CG 27798 Query 105712 TGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGT 105771 ||| || || |||||||||| | ||||| || || || || | ||| || || Sbjct 27797 TGGCTCTATACAAAATATTGAACAGATTCCCAAAGAGATCCGAGAGCTTTACAAAACCGT 27738 Query 105772 TTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGA 105831 ||||||||| | ||| ||| | |||||||| |||||||| |||||| || Sbjct 27737 TTGGGAAATTTCCGTCAAGACAACCATCAAAATGGCCGCCGATCGTGGGGCCTTCATCGA 27678 Query 105832 TCAAAGTCAA 105841 ||| |||||| Sbjct 27677 TCAGAGTCAA 27668 >seq9983 Length=370597 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||| || ||||| ||||| | || || | ||| || ||||| || ||||| || ||||| Sbjct 243474 ATCGAAACGACCGGGACGTAAAAGGGCTTTATCCAGAATATCTACACGATTTGTAGCGGC 243533 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 | || |||| || ||| ||||||||||| || || | ||| || | Sbjct 243534 CAGCACTACAACGTTGGTGGTGGTATTGAAACCATCCATTTCAACCAGCAATTGATTCAA 243593 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC-ACTGCGTTGCTTTCCCACGG 9704 || | ||| ||||| | | || || | || || || |||| || |||| Sbjct 243594 TGTGTTCTCCTGTTCAG-AGTGGCCACCAAAGGACTTGCCACCACGTTTACGACCAACGG 243652 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 9764 ||||||| ||||| ||||| | ||||| || ||||| || || | |||| | || Sbjct 243653 CATCAATTTCATCGATGAACAGAATGCAGGGGGCATTTTTACGGGCCATGGCAAACATAT 243712 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACAT 9823 | || ||||| | || ||||| ||||||||||||| ||| | || | | || ||| Sbjct 243713 CGCGGACACGTGATGGACCAACACCCACAAACATCTCCAAAAACTCTGAGCCAGAGACAG 243772 Query 9824 TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | |||||| || ||||| | |||||| ||| | || ||| | | ||| |||||||| Sbjct 243773 T-GATGAAAGGCACATTGGCTTCACCGGCAGTAGCCTTGGCCAACATAGTTTTACCCGTG 243831 Query 9884 CCTGG 9888 || || Sbjct 243832 CCGGG 243836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583111434199880