Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9744 123 2e-23 seq9576 123 2e-23 seq10951 95.1 8e-15 >seq9744 Length=475756 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| | ||| ||||||||||||||| ||||| || | || || Sbjct 179459 AGACGCAGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGA 179518 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| ||||| || ||||||||||||||||| || || | || ||| Sbjct 179519 CCATCTTCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCC 179578 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||||| | |||||| || ||||| |||| || Sbjct 179579 TTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGT 179637 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || ||||| || || ||||| || |||||||| || Sbjct 179638 AATTGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 109 bits (120), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| |||||||||||| || ||||| || Sbjct 179222 CCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGAT 179281 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || || || || |||||||| ||||| || || Sbjct 179282 AAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 179341 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | || ||||| ||| ||| ||||| || || | || || ||| | ||||| Sbjct 179342 ATACCTTCCTTATCTTGGAT-TTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCT-- 179398 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || |||||||| || || || || || ||||| ||||| Sbjct 179399 ACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 179448 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| |||||||||||| || ||||| || | || || Sbjct 178547 AGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGG 178606 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || || || || |||||||| ||||| || || | || ||| Sbjct 178607 CCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 178666 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | || || | ||| || ||| ||| ||||||| ||| Sbjct 178667 TTATCTTGGAT-TTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGT 178725 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || || || || || ||||| ||||| Sbjct 178726 AATAGTTTTACCTGTCAAAGTCTTAACGAAAATTTGCAT 178764 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| ||||||||| || |||||||| || Sbjct 178310 CCTCCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGAC 178369 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || ||||| || || || || |||||||| ||||| || || Sbjct 178370 AACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGA 178429 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| |||||| | ||||| | || || ||| | |||||| Sbjct 178430 ATACCTTCCTTATCTTGGATCTTG-GCCTTAACATTTTCTATGGTATCTGAGGGCTCCAC 178488 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || || ||||| ||||| Sbjct 178489 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178536 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| |||||| |||||||| ||||| || Sbjct 178082 CCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGAT 178141 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || ||||| || || || || |||||||| ||||| || || Sbjct 178142 AAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178201 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || ||| ||| | || || | |||||| || |||||| Sbjct 178202 ATTCCTTCCTTATCCTGGAT-TTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCAC 178260 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || || ||||| ||||| Sbjct 178261 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| ||||| ||||| ||||| || ||||| || Sbjct 178766 CCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGGAT 178825 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || || || || |||||||| ||||| || || Sbjct 178826 AAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178885 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||| | || || | || || ||| |||||| Sbjct 178886 ATACCTTCCTTATCTTGGAT-TTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCAC 178944 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || ||||| || ||||| ||||| Sbjct 178945 TTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 178992 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | ||| || || ||||||||||| || ||||| || Sbjct 177512 GCCTCCGCGAAGACGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGA 177571 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | |||||| || || || || |||||||||||||| || || Sbjct 177572 CAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGG 177631 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| || ||| ||| | || || | || || ||| ||| | Sbjct 177632 AATACCTTCCTTATCCTGGAT-TTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAA 177690 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || |||||||| || || || || || ||||| ||||| Sbjct 177691 CTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 177739 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| |||||||||||| || ||||| || Sbjct 178994 CCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGAT 179053 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || ||||| || || || || |||||||| ||||| || || Sbjct 179054 AAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 179113 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || || ||| ||| | || || | || || ||| |||||| Sbjct 179114 ATTCCTTCTTTATCCTGGAT-TTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCAC 179172 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || || ||||| ||||| Sbjct 179173 TTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 >seq9576 Length=1569244 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | |||||||| || || || || || || ||||||||||| Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | |||||||| || ||||| ||||| |||| | |||||||| || || Sbjct 195592 AATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGA 195533 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| | ||||||| | ||| || ||| |||||| Sbjct 195532 ATGCCTTCTTTGTC-CTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 |||| ||| || ||||| || ||||| || ||||| || |||||||| ||| || Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGTTT 195419 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| | ||| || || || ||||| || || || | ||| || Sbjct 195871 AGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGA 195812 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || ||||| || || ||||||||||| || || || | || ||| Sbjct 195811 CCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCC 195752 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| ||| | || ||||| || ||||||| || Sbjct 195751 TTGTCT-TGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGT 195693 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| |||||||||||||| Sbjct 195692 GATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||||||||| || ||||| || |||||||| || || Sbjct 196793 GCCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 196734 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || | |||||| || ||||| || ||||| ||||| || || || Sbjct 196733 AAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGG 196674 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| ||| ||| | || ||| | || ||||| || | Sbjct 196673 AATACCTTCCTTGTCT-TGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTA 196615 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | || || || || || ||||| Sbjct 196614 CTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 >seq10951 Length=171266 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| | ||| |||||||| ||||| || || || Sbjct 139778 CCACCACGAAGACGGAGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 139837 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || ||||| ||||| || || || Sbjct 139838 AAGGTGCGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGG 139897 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| |||||| || | | ||| ||||| ||| || Sbjct 139898 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACC 139957 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| || || || |||||||| | || || || || |||||||| || Sbjct 139958 TCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314651016641471