Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7037 111 1e-19 seq9744 107 1e-18 seq9576 107 1e-18 seq10951 102 6e-17 >seq7037 Length=35088 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| || |||| ||| || ||||| |||||||||||||||||||||||||| Sbjct 23046 GACAAAGAGGGAATTCCACCGGATCAACAACGATTAATTTTTGCCGGAAAACAATTGGAA 22987 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||| ||||| || || || || ||| |||||||||||||| || Sbjct 22986 GATGGCCGAACATTGTCTGATTATAATATTCAGAAGGAGTCTACTTTGCATTTGGTCCTG 22927 Query 28003 CGTTTGCGTGGCGG 28016 ||||| ||||| || Sbjct 22926 CGTTTACGTGGAGG 22913 >seq9744 Length=475756 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||||||||| || || ||| | || || ||| |||||| | || || || | | Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| |||||| || || |||||| |||| || Sbjct 179389 AGATACCATAGAAAAT--GTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGAC 179332 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||| || || |||||||| || || | |||| ||| || |||||| Sbjct 179331 CAGCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTAC 179272 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| ||| ||||||||||||||| | ||| | ||||| || Sbjct 179271 AATATTCAAAAGGAGTCAACTTTGCATTTGGTTCTCCGTCTTCGTGGTGG 179222 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || || || || |||||||| ||||||||||||||||| Sbjct 179583 GACAAGGAAGGCATTCCTCCAGACCAACAGCGTTTAATTTTCGCCGGAAAACAATTGGAA 179524 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| || ||||||||||| ||||| ||| |||||||||||||| || Sbjct 179523 GATGGTCGTACCTTATCTGATTACAACATTCAAAAGGAGTCAACTTTGCATTTGGTCCTG 179464 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 179463 CGTCTCCGTGGTGG 179450 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || ||| | || || ||| |||||| | || || || | Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| ||||| ||||| || || |||||| |||| || Sbjct 178705 AGATACCATTGAAAAT--GTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGAC 178648 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||| || || |||||||| || || | |||| ||| ||||||||| Sbjct 178647 CAGCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTAC 178588 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| ||| ||||||||||||||| | ||| | ||||| || Sbjct 178587 AATATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGG 178538 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||||||||| || ||||| | ||||| || || || | || || || | | Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||||| || || |||||| |||| || Sbjct 178933 AGATACCATAGAAAAT--GTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGAC 178876 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||| || ||||||||||| || || | |||| ||| ||||||||| Sbjct 178875 CAGCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTAC 178816 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || ||| |||||||||| | ||| | ||||| || Sbjct 178815 AATATTCAGAAGGAATCAACTCTGCATTTGGTCCTACGTCTTCGTGGTGG 178766 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||||||||| || || ||| | ||||| || || || | || || || | | Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 179162 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||||| || |||||||| |||| || Sbjct 179161 AGATACCATAGAAAAT--GTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGAC 179104 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||| || || ||||| | || || | || | ||| ||||||||| Sbjct 179103 CAGCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTAC 179044 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| ||| ||||||||||||||| | ||| | ||||| || Sbjct 179043 AATATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTTCGTGGTGG 178994 >seq9576 Length=1569244 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| | ||||| || || ||| | || || ||| || Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| ||||| ||||| |||||| |||| || || Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || || ||||| || || ||||| || | || | ||||| || |||||| Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 195833 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| |||||||||||||| |||||| ||||||| || Sbjct 195834 ATCCAGAAAGAATCTACTTTGCATTTGGTATTGCGTCTGCGTGGTGG 195880 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| ||| ||| || | || || ||| || Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || ||||| || || ||||| |||||| |||| || || Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || ||||| || || ||||| || | || | ||||| || |||||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| |||||||||||||| |||||| ||||||| || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGTGG 196336 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || | ||||| ||| ||| || | || || ||| || Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| ||||| ||||| |||||| |||| || || Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196001 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || ||||| || || ||||| || | || | ||||| || || ||| Sbjct 196002 CAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196061 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| |||||||||||||| |||||| ||||||| || Sbjct 196062 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196108 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || ||||| ||| || ||| | || || ||| || Sbjct 196338 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTTGAACCTTCC 196397 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || ||||| ||||| ||||| |||||| |||| || ||| Sbjct 196398 GATACTATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 196457 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || || ||||| || || ||||| || | || | ||||| || || ||| Sbjct 196458 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196517 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| |||||||||||||| |||||| ||||||| || Sbjct 196518 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || || ||||| ||| || ||| | || || ||| | Sbjct 196566 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTAGAACCTTCT 196625 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| ||||| ||||| |||||| |||| || || Sbjct 196626 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196685 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTACAA 27968 ||||| || |||||||| || ||||||||||| |||| ||||| |||| ||||| || || Sbjct 196686 CAACGTTTGATTTTTGCTGGCAAACAATTGGAGGACGGACGCACGCTT-TCCGACTATAA 196744 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||| || || || | ||||||||| | ||| | || || ||| Sbjct 196745 CATCCAGAAGGAATCTACACTCCATTTGGTTCTTCGTCTTCGCGGAGGC 196793 >seq10951 Length=171266 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || || ||||| || || || ||||| ||||||||||| Sbjct 139911 GACAAGGAAGGTATCCCCCCAGATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAA 139852 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| |||||||||||||| || ||| ||||||||||| | Sbjct 139851 GATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTGCATTTGGTACTC 139792 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 139791 CGTCTTCGTGGTGG 139778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355773546385449