Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9576 145 2e-29 seq10951 140 8e-28 seq9744 127 5e-24 >seq9576 Length=1569244 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||| ||||||||||| || | | || | |||||||||| ||||||||| Sbjct 196079 AGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 196020 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | ||||||||| || ||||||| ||||||||||| || || || ||| Sbjct 196019 GGCGAAGATCAAGCGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 195960 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||| ||||| || |||||| || | ||||| || || || || | || Sbjct 195959 GACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGT 195900 Query 211097 CTTTACAAACACCTGCAT 211114 |||||| || | ||||| Sbjct 195899 CTTTACGAAGATTTGCAT 195882 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||| |||||||| || || | | || | |||||||||| ||||||||| Sbjct 195851 AGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 195792 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | || ||||| || ||||||| ||||||||||| || || || ||| Sbjct 195791 GGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 195732 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||||||||| ||||| || |||||| || | ||||| |||||||| || | || Sbjct 195731 GACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCAGTCAATGT 195672 Query 211097 CTTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 195671 TTTAACAAAAATCTGCAT 195654 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||||||||| || || | | || | |||||||||| ||||||||| Sbjct 196307 AGTAGATTCTTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 196248 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | |||||||| || ||||||| |||||||||||||||||||| || Sbjct 196247 GGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTT 196188 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||||| || || || || |||||| || | ||||| || || || || | || Sbjct 196187 GACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGT 196128 Query 211097 CTTTACAAACACCTGCAT 211114 ||||| || | ||||| Sbjct 196127 TTTTACGAAAATTTGCAT 196110 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || || || || || || ||||||||||| || | ||| || Sbjct 196786 CGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTG 196727 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || |||| || ||||| || || || | |||||||| || ||||||| ||| Sbjct 196726 CGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCT 196667 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || || || |||||||||||||||||||| ||| || || | Sbjct 196666 TCCTTGTCTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAAT 196607 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || || |||||||| || | ||||| Sbjct 196606 GTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||| ||||||||||| || | | || | |||||||||| ||||||||| Sbjct 196535 AGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTCCAACTGCTTGCC 196476 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | || || || || ||||||| ||||||||||| || || || || Sbjct 196475 GGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTT 196416 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 |||||||| || || || || |||||| || | ||||| || || || || || || Sbjct 196415 GACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTTTTGCCAGTCAGGGT 196356 Query 211097 CTTTACAAACACCTGCAT 211114 |||||| || | ||||| Sbjct 196355 CTTTACGAAGATTTGCAT 196338 >seq10951 Length=171266 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | | ||| | |||||||||| || || || Sbjct 139808 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTACCG 139867 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | |||||||| || || || | ||||||||||| |||||||| || Sbjct 139868 GCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGGATCTTAGCCTTG 139927 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| |||||||| || || ||||| | |||||| ||||| || ||||| ||| Sbjct 139928 ACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTACCGGTGAGGGTC 139987 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | ||||||||| Sbjct 139988 TTGACGAAGATCTGCATTTT 140007 >seq9744 Length=475756 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || | ||| ||||| ||||| ||||| ||||| | | ||| | |||||| Sbjct 179465 AGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCT 179524 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || ||||| || | || |||||||| ||||||| |||||||||||| Sbjct 179525 TCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCC 179584 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || ||||| || || || || ||| ||||| | || || ||| Sbjct 179585 TGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTC 179644 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| || || | ||||||||| Sbjct 179645 TTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158847734553755