Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9744 91.5 1e-13 seq9576 89.7 4e-13 >seq9744 Length=475756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| |||||||| | || ||| ||||| ||||| ||||||| | || || | Sbjct 179006 CGTAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCA 179065 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| || || || | |||||||||||| | ||| | | ||||| Sbjct 179066 TCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTA 179125 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| |||| | | | ||||| | |||||| |||| ||||| Sbjct 179126 TCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATG 179185 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| || || || || |||||||| Sbjct 179186 GTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 179220 >seq9576 Length=1569244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||||| || | |||||||| || || ||||| || ||||||||||| | Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| ||| | || |||||||| || || ||||| || || | || ||||| | || Sbjct 195592 AATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGA 195533 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | || ||||||||| ||| ||| | || | || | | | ||||| | |||||| Sbjct 195532 ATGCCTTCTTTGTCC-TGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| || || |||| || || | || || || ||||| ||||| || Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429438348772631