Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10951 134 9e-27 seq9744 134 9e-27 seq9576 134 9e-27 >seq10951 Length=171266 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || |||||||| || || || |||||| | || || || | Sbjct 140007 AAAATGCAGATCTTCGTCAAGACCCTCACCGGTAAGACCATCACTTTGGAGGTCGAGCCT 139948 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||||| | || || || ||||| |||||| | || |||||| Sbjct 139947 TCCGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCAGAT 139888 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || ||||| |||||| ||||||| | ||||| || ||| ||| Sbjct 139887 CAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTAC 139828 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| || ||||| || ||||| || Sbjct 139827 AACATCCAAAAGGAATCCACCTTGCATTTGGT 139796 >seq9744 Length=475756 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||| | || || || || || || | || || || | Sbjct 179679 AAAATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACAATTACATTGGAGGTGGAACCT 179620 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||||| ||||| |||||| ||||| ||||| | || ||||| Sbjct 179619 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATTCCTCCAGAC 179560 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||||||||| || ||||| |||||| ||||||| | || || ||| |||||| Sbjct 179559 CAACAGCGTTTAATTTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTATCTGATTAC 179500 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| ||||| || || ||||| || Sbjct 179499 AACATTCAAAAGGAGTCAACTTTGCATTTGGT 179468 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| || | || || ||||| || || | ||||| || | | Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | || ||||| || || |||||| | || ||||| || Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||||||| | ||||| | ||||| ||| ||||||||| Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || || ||||| ||| || | | || |||||| Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGGA 178537 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || | || ||||| || |||||| | ||||| || | | Sbjct 178309 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCTTC 178250 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||||| | || ||||| || || ||||| | || ||||| || Sbjct 178249 GGATACAATTGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGAATTCCCCCAGACCA 178190 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || |||||||| || ||||| | || || ||| |||||||| Sbjct 178189 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCTGATTACAA 178130 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || || ||||| || Sbjct 178129 CATTCAGAAGGAGTCAACTTTGCATTTGGT 178100 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||||||||| | || ||||| || |||||| | ||||| || | | Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||||| || || |||||| | || ||||| || Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || |||||| | ||||| | ||||| ||| ||||||||| Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||||| || Sbjct 178813 TATTCAGAAGGAATCAACTCTGCATTTGGT 178784 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || || | || || ||||| || || | |||||||| | | Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | || ||||| || || |||||| | || ||||| || Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || || ||||||||| | ||||| | ||||| || ||||||||| Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 || ||||| || || || ||||| Sbjct 177560 TATTCAAAAGGAATCGACCCTACAT 177536 >seq9576 Length=1569244 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| | || ||||| || ||||| | |||||||| | | Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | ||| |||||| ||||| |||||| | || ||||||||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || ||||||| | || || || || |||||| Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 195833 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || ||||| || || || ||||| || || Sbjct 195834 ATCCAGAAAGAATCTACTTTGCATTTGGTATT 195865 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | || || ||||| ||||| | |||||||| | | Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || ||||| |||||| | || ||||||||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || |||||||| || ||||||| | || || || || |||||| Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || || || ||||| || || Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTT 196321 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| ||||| | ||||| || | | Sbjct 196566 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTAGAACCTTCT 196625 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || |||||| ||||| |||||| | || ||||||||| Sbjct 196626 GACACCATCGAAAACGTCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196685 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||||||| |||| |||| |||||| | ||| || ||| Sbjct 196686 CAACGTTTGATTTTTGCTGGCAAACAATTGGAGGACGGACGCACGCTTTCCGACTATAAC 196745 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || ||| | ||||| ||| Sbjct 196746 ATCCAGAAGGAATCTACACTCCATTTGGTT 196775 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || ||||| ||||| | |||||||| | | Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | ||| |||||| ||||| |||||| | || ||||||||| Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196001 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || |||||||| || ||||||| | || || || || || ||| Sbjct 196002 CAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196061 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || || ||||| || || | |||| ||||| Sbjct 196062 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196108 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || || | || || ||||| || || | || || || | Sbjct 195423 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCT 195482 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||||| | ||| |||||| ||||||||||| | || ||||| Sbjct 195483 TCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGAC 195542 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | |||| ||||| || || || || ||||| | |||||| ||| ||||| Sbjct 195543 CAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTATCAGATTAT 195602 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || ||| | ||||| || Sbjct 195603 AATATCCAGAAAGAATCAACACTTCATTTGGT 195634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337925203967396