Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq10162 253 2e-62 >seq10162 Length=1180275 Score = 253 bits (280), Expect = 2e-62 Identities = 573/842 (68%), Gaps = 32/842 (4%) Strand=Plus/Plus Query 4255 ATTTTTGGTATTCGGATACTCGCTTTTCG----AAGAAATTAGTTTTGCCTTCTAACGAA 4310 ||||||||||||| || | |||| || |||||||| ||||| || || || ||| Sbjct 71335 ATTTTTGGTATTC----ACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAA 71390 Query 4311 ATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCT 4370 || ||||||| || || ||||| | | ||||| ||| || | | | Sbjct 71391 ATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAATTCA 71450 Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || |||| || || || |||||||| ||||| | ||| | ||| || || |||||| Sbjct 71451 ACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCA 71510 Query 4431 ATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT 4489 ||||| | ||| || || || | || | || || ||||| || |||| || ||| Sbjct 71511 ATTAAATT-ACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCG 71569 Query 4490 GATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACA 4549 ||| || || | || ||||| ||||| | || | ||| |||| | | | Sbjct 71570 GATGATTTCAATAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACA-TCAGTA 71628 Query 4550 CG-CAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAAT 4607 || |||||||||||||||| |||||||| | || | |||| ||| || || || || || Sbjct 71629 CGGCAAAATCACAATGCAAGCCTTCGTCAC-GCGAGATCAATTCATTGGAGAATGTCAAG 71687 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATG-ACC-CAGAAAAGA 4665 || ||||||| ||| | || ||||||||||| || | |||||| ||| | ||||| Sbjct 71688 CCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA-- 71745 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCT 4724 |||| || || ||||| |||||||| | | || || || ||| | | || | Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGA-T 71804 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 ||||||| || ||||| | || || ||||||||| || ||||| | || || Sbjct 71805 GAAATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCA 71864 Query 4785 TTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || | ||| || || || |||| | ||| || || || || || | ||| Sbjct 71865 TTGAAAAGATATTCACGTTGATCGC---GGTCCTTAATGTATGTATCGATCAGAATACTA 71921 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||| || || | |||||| || ||||| || || || || ||||| | |||||| Sbjct 71922 TACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCT 71981 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 || ||||| || || | | || | ||| ||||| ||||| || || ||||| ||| | Sbjct 71982 GTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAG 72041 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTT 5018 || || ||||| |||| |||||||||||| || || |||| ||| | |||| | | Sbjct 72042 GCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTG--TTAA-TCTA 72098 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||| | | || ||||| | | |||||||||||| || |||||||| || || || Sbjct 72099 TCCCAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCT 72158 Query 5079 GC 5080 || Sbjct 72159 GC 72160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426942971987171