Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10186 668 0.0 seq10162 318 8e-82 seq9684 107 3e-18 >seq10186 Length=270785 Score = 668 bits (740), Expect = 0.0 Identities = 1517/2263 (67%), Gaps = 34/2263 (2%) Strand=Plus/Plus Query 76775 ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGT 76834 ||||| ||||||||||| | | | || || ||||| |||| ||| ||||| || || Sbjct 27527 ATCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGT 27586 Query 76835 TTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGAT 76893 || || || || || ||| |||||||| ||| |||| ||| ||| | || | Sbjct 27587 CTTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTT 27645 Query 76894 CGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCA 76953 |||||| || ||||| | ||| ||||| ||||||||||| || || | ||| || |||| Sbjct 27646 CGGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCA 27705 Query 76954 TTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCAT 77013 |||| || | ||||| | ||||||||||| |||||| ||| | | ||| || | Sbjct 27706 TTTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTT 27765 Query 77014 CTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATAT 77070 |||| | | ||||||| || || |||| || || || ||||||| |||| Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 77071 CATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAA 77130 | |||| |||||| | || || ||| | | || | ||| |||| || || | || Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 77131 ATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCAT 77190 |||| || || | ||| | ||| ||||||||||| || || || || | ||||||| Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 77191 TGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTC 77250 | || |||| ||| || || ||||||||||| ||||| ||||| | | || || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 77251 TGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTA 77310 | |||||| | ||||| | ||||| | ||||||||| | || | |||| Sbjct 28006 GCACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTA 28065 Query 77311 CAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTT 77370 | || ||| | ||| || || ||||| || || || || || |||||||| Sbjct 28066 CTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTT 28125 Query 77371 CATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTG 77430 |||| || || ||| | ||||| ||||||||||| || ||||| || || || ||||||| Sbjct 28126 CATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTG 28185 Query 77431 TTTCGAAAATCTTCTTATTGAGATCTTGT--GCTTCAATACTATCAAACGGATAATGTAA 77488 |||||||||| | || ||| || ||||| || | ||| ||| | || ||| | | Sbjct 28186 TTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGGGGTAACGCAT 28243 Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||||| | || || || || || || || ||||||||||| || | ||||||| |||| Sbjct 28244 CAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATT 28303 Query 77549 GGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCT 77608 ||| || | ||||| || | ||||| || || ||||| || |||||||||||||| | Sbjct 28304 GGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGCG 28363 Query 77609 AACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTCCATCTA-TAAC 77665 ||| || || |||| | ||| | ||| |||||| | |||| | | | || Sbjct 28364 CGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTTCTGGAGTCAC 28423 Query 77666 AAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATA 77725 |||||| || | | || || || | |||||||||||| | |||| || | || Sbjct 28424 AAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGAGTA 28483 Query 77726 TTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCT 77785 | | || || ||||| | ||| || |||||||| ||||| | ||||||||| || || Sbjct 28484 CTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACT 28543 Query 77786 CTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTC 77845 ||| |||||| | ||| || | || ||| | || || || ||||| | || | ||| Sbjct 28544 CTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTC 28603 Query 77846 GATAATAGATTTCCAGA-CGACTCTAGCTTTTA---TCATAGATTTGTATCGCCTCTCTC 77901 ||| || | ||| | || || ||||||| || | ||| | | |||| || Sbjct 28604 GATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCT--ATTGGCTTTGCCT-TCCT 28659 Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 |||| |||| || || ||||||||| |||||||| ||||| | | || || | Sbjct 28660 TTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGAC 28719 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 ||| | ||| ||||| | |||||||| |||| || | || || |||||||| |||| Sbjct 28720 ATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGAT 28779 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 | || ||||| || || || ||||||| || | ||| ||||| || ||||| || | Sbjct 28780 CGGGAATCCAAAGGGCGTAGAAAAGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTTTT 28839 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 | || | ||| | |||||| | |||||| |||||||||||||| | ||| || || | Sbjct 28840 TCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAATG 28899 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | ||||| ||||| || || ||||| | ||| | || || || | || || | Sbjct 28900 CGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACCCTTA 28959 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 |||| || | | ||| || ||||| ||||| || || | |||| || |||| | |||| Sbjct 28960 ACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGGCGC 29019 Query 78262 GAATATTACTAATGGA----TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 | ||| |||||| || || |||||||| ||| || ||||| | ||||| Sbjct 29020 GTATA----CAATGGACATTGATGCCAATTCCTCCGGCCGATTTCGATATCATGGCGCAC 29075 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 ||| | | | | | ||||| || || ||| ||| |||| | || || ||||| Sbjct 29076 TGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAACAA 29135 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||| || | || || | ||| ||||| || ||||| ||||| ||||| Sbjct 29136 GACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTAAAG 29195 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| ||||| | ||||| || || || || | || ||||| ||| || Sbjct 29196 TAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTATG 29255 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 || || || |||||||| | ||| || ||||| || || | |||| ||| |||||| Sbjct 29256 CCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATTTTC 29315 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 ||||| || || ||||||| |||||||| |||||||| ||||| || || | || Sbjct 29316 AACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGATCA 29375 Query 78618 TAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATAT--CCATGACAGTAG 78675 |||| ||| | ||||| || || | || | || | || |||| | | Sbjct 29376 TAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACATTATAATGAAACT-- 29433 Query 78676 TTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCA 78735 || || || || | || || ||| | ||| ||| | | ||||| | Sbjct 29434 CCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACTGA 29493 Query 78736 TTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAG 78795 | || || || | || || |||||||| || ||||| |||||||| || | || | Sbjct 29494 TCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGCTG 29553 Query 78796 CTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAA 78855 | || | ||||||||||| ||| | || || ||| || || |||| || || ||| Sbjct 29554 CCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAAAT 29613 Query 78856 TATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTT 78915 |||| || | | || || || ||| ||| | || | ||| || | | || || Sbjct 29614 TATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTATGG 29673 Query 78916 TGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATGTGA 78975 |||||||| ||||| || | ||||| ||||| || | ||| || |||||||||| Sbjct 29674 CAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGTGA 29733 Query 78976 TTTTATC-AAATATAACATTCTCCTTGCATCCATTTCGTTTAA 79017 | || || |||| | || | ||||||| |||| ||| |||| Sbjct 29734 TCTTGTCGAAATGT-ACCTCTTCCTTGCGACCATCTCGCTTAA 29775 >seq10162 Length=1180275 Score = 318 bits (352), Expect = 8e-82 Identities = 579/836 (69%), Gaps = 16/836 (2%) Strand=Plus/Plus Query 47844 CCCATTTTTTGATATTCACCCACACGTTTC--TCGAAAAAATTAGTTTTGCCTTCCAATG 47901 ||||||||| | ||||||||||| || | || || ||||| ||||| || ||||||| Sbjct 71332 CCCATTTTTGG-TATTCACCCACT--TTGCGTTCAAAGAAATTTGTTTTACCATCCAATG 71388 Query 47902 ATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA-ATCCTAAT 47960 | || ||||||| || || ||||| | ||| || ||||| || |||| ||| Sbjct 71389 AAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCC-AAT 71447 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | ||| | ||| ||||| ||||| |||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || | ||| ||| ||||| || || || || || ||||| || | |||||||| Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 48081 ACTATTAT--CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA 48138 || || | || ||| ||| | || ||| | || || || ||| ||||| | Sbjct 71568 CGGATGATTTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 48139 AACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 48198 |||||||||||||| | ||||| || | || ||||| || || ||||| | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 48199 GACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGA 48258 || |||||||| |||||||| || |||||||| || | || ||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 48259 ATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGT 48315 |||| || || ||||| ||||| || ||| | ||||| || | || ||| | | Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTC-TGAT 71804 Query 48316 GTA-TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | | |||| |||||||| ||||||||||| || ||||||||||| || ||| Sbjct 71805 GAAATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCA 71864 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || || ||| | | || || || || |||| ||| ||||| || | || ||||||| Sbjct 71865 TTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATAC 71924 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 ||||||||||||| |||||| || || || || || || || || || | |||||||| Sbjct 71925 ATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTC 71984 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || ||||| | || |||||| | ||||| ||||| || || |||||| || Sbjct 71985 ACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCG 72044 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 || ||||| || | ||||| || ||||| ||| ||| || | | ||| ||| Sbjct 72045 GCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAA 72104 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| | | ||||| || | ||| |||||||| ||||||||||||| |||||||| Sbjct 72105 TCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGC 72160 >seq9684 Length=559441 Score = 107 bits (118), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 43298 CCCAATTCCTTGACCTGTGTTAGAGATCGCCAATCCATGTTAGCACTTCCTAAATAAATA 43357 |||| ||| || ||||| |||||||||| ||| ||||| ||||||||||| ||||||| | Sbjct 346053 CCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAAA 346112 Query 43358 TGTCTATTATCTGATATCCAAAATTTAGTATGAAGAACTCCACC 43401 || || | ||| || ||||||||||||||||| | ||||| || Sbjct 346113 TGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694490904003680