Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10186 587 1e-162 seq10162 307 2e-78 seq9684 102 1e-16 >seq10186 Length=270785 Score = 587 bits (650), Expect = 1e-162 Identities = 1494/2257 (66%), Gaps = 22/2257 (1%) Strand=Plus/Plus Query 75370 ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGT 75429 ||||| ||| |||||||||| | || || || ||||| |||| ||| ||||| || || Sbjct 27527 ATCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGT 27586 Query 75430 TTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGAT 75488 || || || || || ||| |||||||| ||| || | ||| ||| | || | Sbjct 27587 CTTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTT 27645 Query 75489 CGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCA 75548 |||||| || ||||| | ||| ||||| ||||||||||| || || | ||| || |||| Sbjct 27646 CGGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCA 27705 Query 75549 TTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCAT 75608 |||| || | ||||| | ||||||||||| |||||| ||| | | ||| || | Sbjct 27706 TTTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGATCTCTT 27765 Query 75609 CTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCT 75665 |||| | | ||||||| || || || | ||| || || ||||||| || | Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGGCTAGAAATGATCTTATTCTTCATAT 27825 Query 75666 CATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAA 75725 | |||| |||||| | ||||| ||| | | || | ||| |||| ||||| | || Sbjct 27826 CTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTAA 27885 Query 75726 ATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCAT 75785 |||| || || | ||| | || ||||||||||| || || || || | ||||||| Sbjct 27886 ATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCAT 27945 Query 75786 TGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 75845 | || |||| ||| || || || |||||||| ||||| ||||| | | || || | Sbjct 27946 TATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTGC 28005 Query 75846 TGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTA 75905 | |||||| | ||||| | ||||| | ||||||||| | || | |||| Sbjct 28006 GCACACCATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGGGTA 28065 Query 75906 CAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTT 75965 | || ||| | ||| || || ||||| || ||||| || || |||||||| Sbjct 28066 CTTTATTCCACATATCATACTGAAGAATACCTTTGCTTACAGGGCTACCGGGATATGTTT 28125 Query 75966 CGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTG 76025 | || | || || || ||||| ||||| ||||| ||||| || ||||| || ||||||| Sbjct 28126 CATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAGTAAATTG 28185 Query 76026 TTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAA 76085 |||||||||| | || |||||| | | || | ||| ||| | || ||| | | | Sbjct 28186 TTTCGAAAATTTGCTGATTAAGCTTGTAGGCCTGTTCACTTTCATAGGGGTAACGCATCA 28245 Query 76086 GAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGG 76145 |||| | | || || | || || || ||||||||||| || | ||||||| |||||| Sbjct 28246 GAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTCTCATATTGG 28305 Query 76146 AAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGA 76205 | || ||||| || | || || || || || || || |||||||||||||| | Sbjct 28306 ACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGAGATTGCGCG 28365 Query 76206 CAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCCATCTA-TCAC 76260 ||| || || |||| | ||| | ||| |||||| | ||||| | | |||| Sbjct 28366 TAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATACGTCTTTTC--TGGAGTCAC 28423 Query 76261 AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATA 76320 ||||||||| ||| || || || | ||||||||| || | |||| || | || Sbjct 28424 AAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGTGCCGAGTA 28483 Query 76321 TTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCT 76380 | | || || || || | ||| || || ||||| || |||| ||||||||| || || Sbjct 28484 CTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGTTGATTACT 28543 Query 76381 CTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTC 76440 ||| || || | ||| || | || | | | || ||||| ||||| | || | ||| Sbjct 28544 CTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACTTGGGCTTC 28603 Query 76441 GATAATAGATTTCCAGA-CGACTCTAGCTTTTATTAT-AGATTTGTATCGCTTCTCTCTT 76498 ||| || | ||| | || || ||||||| | ||| | | || | || || Sbjct 28604 GATGATGGCAAACCATAGCGCCT-GCGCTTTTACGGTCCTATTGGCTTTGCCT-TCCTTT 28661 Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 || |||| | || | ||||||||| |||||||| ||||| | | || |||||| Sbjct 28662 TCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCCGGACAT 28721 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 | | |||||||| | ||||| || |||| || | || || |||||||| ||||| Sbjct 28722 TTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAACAGATCG 28781 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 || ||||| || || || ||||||| || | | | ||||| || ||||| || || Sbjct 28782 GGAATCCAAAGGGCGTAGAAAAGATCTCTGGCACGATGCTCTTCCTTGCCTGTGTTTTTC 28841 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || | ||| | ||||| | |||||| |||||||||||||| | ||| || || | | Sbjct 28842 TTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGCAAATGCG 28901 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 || || ||||| || || ||||| | ||| | ||| || || | || || ||| Sbjct 28902 CCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATACCCTTAAC 28961 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGA 76858 || || | | || || ||||| ||||| || || | |||| || |||| || || Sbjct 28962 ATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTTGGCGCGT 29021 Query 76859 ATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC 76918 ||| | | | | ||| |||||||| ||| ||| || || | || || ||| Sbjct 29022 ATACAATGGACATTGATGCCAATTCCTCCGGCCGATTTCGATATCATGGCGCACTGTTCA 29081 Query 76919 AATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGAC 76978 | | | | || || || || |||| ||| |||| | || || ||||| ||| Sbjct 29082 ACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAACAAGACGAC 29141 Query 76979 ATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTT 77038 | || | || || | ||| ||| | || ||||| |||||||| || | | Sbjct 29142 AGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTAAAGTAACGT 29201 Query 77039 TCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACA 77098 || ||||| | ||||| || || || | || || || || ||| || || ||| Sbjct 29202 TCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGTATGCCCACA 29261 Query 77099 GCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAG 77158 || |||||||| | ||| || ||||| | || || |||| ||| ||||||||||| Sbjct 29262 GCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATTTTCAACAAA 29321 Query 77159 TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 77218 || || ||||||| |||||||| |||||||| ||||| || || | || |||| | Sbjct 29322 TACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGATCATAAACA 29381 Query 77219 ATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATAT--CCATGACAGTGGTAGAAA 77276 || ||||||| || ||| || || | || | || |||| | | || | Sbjct 29382 ATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACATTATAATGAAACT--CCGATA 29439 Query 77277 TAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGT 77336 | || || | || | || ||| | ||| ||| | | || || || || | Sbjct 29440 TCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACTGATCACCT 29499 Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 || || | || || |||||||| || ||||||||||| || || | || || || | Sbjct 29500 CGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGCTGCCAGCA 29559 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 ||||| |||| ||| | || || || || || |||| || || ||| |||| | Sbjct 29560 AAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAAATTATCCA 29619 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAG 77516 ||| | || || || || ||| | || | ||| || | | || ||| | || Sbjct 29620 ATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTATGGCAACAG 29679 Query 77517 GATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGTGATTTTAT 77576 |||| ||||| || | ||||| ||||| || | ||| || ||||||||||| || | Sbjct 29680 GATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGTGATCTTGT 29739 Query 77577 CAAACATG-ACATTCTCCTTACATCCATTTCGTTTAA 77612 | || ||| || | ||||| | |||| ||| |||| Sbjct 29740 CGAA-ATGTACCTCTTCCTTGCGACCATCTCGCTTAA 29775 >seq10162 Length=1180275 Score = 307 bits (340), Expect = 2e-78 Identities = 578/839 (69%), Gaps = 22/839 (3%) Strand=Plus/Plus Query 46333 CCCATTTTTTGGTATTCACCTACACGTTTC--TCGAAAAAATTAGTTTTGCCTTCCAATG 46390 ||||||||| |||||||||| ||| || | || || ||||| ||||| || ||||||| Sbjct 71332 CCCATTTTT-GGTATTCACC--CACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATG 71388 Query 46391 ATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATCCTAAT 46449 | || ||||||| || || ||||| | ||| || ||||| || |||| ||| Sbjct 71389 AAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCC-AAT 71447 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || | ||| | ||| ||||| ||||| ||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC 46569 || || | || || ||||| || || || || || |||||||| | |||||||| Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 46570 --GATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTA 46627 ||| | || || ||| ||| | || ||| |||| || || ||| ||||| | Sbjct 71568 CGGATGATTTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 46628 AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGA 46687 |||||||||||||| | |||||| || | || ||||| || || ||||| | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 46688 GCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGA 46747 ||||||||||| ||||| || || |||||||| || | || ||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 46748 ATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC--ATCATTATG 46805 |||| || || || || || || || | || | ||||| || | || || | ||| Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATG 71805 Query 46806 AA-TCCACCTTTGA----GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 || |||| ||| |||||||| ||||| ||||| || ||||||||||| || Sbjct 71806 AAATCCA----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATG 71861 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||||| || ||| | | || ||| | || |||| |||||||| || | || |||| Sbjct 71862 GCATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTA 71921 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||| || |||| ||||| || || || || || || || || || | ||||| Sbjct 71922 TACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCT 71981 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 || | || |||||| | || |||||| ||||| ||||| || || |||||| Sbjct 71982 GTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAG 72041 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 || || ||||| |||| ||||| || ||||| ||||| | || | | ||| | Sbjct 72042 GCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCC 72101 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || ||| | | ||||| || | ||| |||||||| ||||||| ||||| |||||||| Sbjct 72102 CAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGC 72160 >seq9684 Length=559441 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41825 CCCAATTCCTTAACCTGTGACAGAGATCTCCAATCCATATTAGCACTTCCTAAATAAATA 41884 |||| ||| || ||||| | ||||||||||| ||||||||||||||||| ||||||| | Sbjct 346053 CCCAGTTCTTTCACCTGCGTTAGAGATCTCCAGTCCATATTAGCACTTCCCAAATAAAAA 346112 Query 41885 TGCATATTATCAGATATCCAAAATTTTGTGTGAAGAACTCCACC 41928 ||| | | |||||| ||||||||||| || || | ||||| || Sbjct 346113 TGCCTGTGATCAGAAATCCAAAATTTAGTATGCAATACTCCGCC 346156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712751826411840