Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9744 134 3e-26 seq9576 122 2e-22 seq10951 114 3e-20 >seq9744 Length=475756 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||| ||||| ||||| || |||||||| | ||| || | ||||| Sbjct 179236 GAGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCAGATAAGGTGCGGCCATC 179295 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||||| ||| || ||||| || | | ||||||||| | | || |||||||| || Sbjct 179296 TTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATC 179355 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| |||||| |||||| | |||| | | ||||| ||||||||| | |||||||| Sbjct 179356 TTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCTACTTCCAAGGTAATAGT 179415 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || | |||||| ||||| | |||||| Sbjct 179416 TTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 179449 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| ||||| ||||| || |||||||||| ||| || | |||||| Sbjct 178553 AGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTGCGGCCATCT 178612 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || ||||| || | | ||||||||| | | || |||||||| ||| Sbjct 178613 TCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCT 178672 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | || | | | |||||| ||||||||| | ||||||||| Sbjct 178673 TGGATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTT 178732 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||| ||||| | |||||| Sbjct 178733 TTACCTGTCAAAGTCTTAACGAAAATTTGCATT 178765 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || ||||| || |||||||||| || || | |||||| Sbjct 177528 AGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGGCCATCT 177587 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || ||||| || | | ||| ||||| | | || |||||||| || Sbjct 177588 TCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCC 177647 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | |||| | | ||||| ||| ||||| | ||||||||| Sbjct 177648 TGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTT 177707 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||| ||||| | |||||| Sbjct 177708 TTACCTGTCAAAGTCTTGACGAAAATTTGCATT 177740 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| ||||| ||||| || |||||||||| ||| || | |||||| Sbjct 179009 AGAACCAAATGCAAAGTTGACTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCT 179068 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || ||||| || | | ||||||||| | | |||||||| || || Sbjct 179069 TCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCC 179128 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | |||| | | ||||| ||| ||||| | ||| || || Sbjct 179129 TGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTC 179188 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||| ||||| | |||||| Sbjct 179189 TTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 179221 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| ||||| ||||| ||||||||||| | ||| || | |||||| Sbjct 179465 AGGACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCT 179524 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| |||||||| || | | ||| ||||| | | || |||||||| || Sbjct 179525 TCCAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCC 179584 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| | || | | || ||| || || || | ||||| || Sbjct 179585 TGAATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTC 179644 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| ||||||||| Sbjct 179645 TTGCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| ||||| || || ||||||||||| | ||| || | |||||| Sbjct 178097 AGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGATAAGGTACGACCATCT 178156 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || ||||| || | | ||||||||| | | ||||||||||| || Sbjct 178157 TCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTATCC 178216 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| |||||| | || | | || ||| ||| ||||| | ||| || || Sbjct 178217 TGGATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCACTTCCAAAGTGATGGTC 178276 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||| ||||| | |||||| Sbjct 178277 TTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178309 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| ||||| |||||||| || ||||| | || || | |||||| Sbjct 178325 AGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCGACAACGTACGACCATCT 178384 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || ||||| || | | ||||||||| | | || |||||||| ||| Sbjct 178385 TCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCT 178444 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | |||| | | ||||| ||| ||||| | ||| || || Sbjct 178445 TGGATCTTGGCCTTAACATTTTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTC 178504 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | |||||| ||||| | |||||| Sbjct 178505 TTTCCAGTCAAAGTCTTGACGAAAATTTGCATT 178537 >seq9576 Length=1569244 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||| || || ||||| ||||| || ||||| | ||| || | |||||| Sbjct 195637 AGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGATAATGTGCGTCCATCT 195578 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || || || ||||| | | || ||||| || || Sbjct 195577 TCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCC 195518 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| || | || | | |||||| ||| || || | ||||| ||| Sbjct 195517 TGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCACCTCCAAGGTAATGGTT 195458 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | |||||||||||||| ||||||||| Sbjct 195457 TTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | |||||| ||||| |||||||| || || | || || | |||||||| Sbjct 196091 GACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTC 196032 Query 151955 TAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | || ||||||||||| |||| | || || || | | || |||||||| |||| Sbjct 196031 CAACTGCTTGCCGGCGAAGATCAAGCGT-TGTTGATCTGGAGGAATACCTTCCTTGTCTT 195973 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 ||||||| |||||| | || | |||| ||| || ||||| | || ||||||| Sbjct 195972 GAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAAGGTGATAGTTT 195913 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || | ||||| ||||||| ||||| Sbjct 195912 TGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | |||||| ||||| |||||||| || || | || || | |||||||| Sbjct 196547 GACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGACAATGTACGACCATCTTC 196488 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | || ||||||||||| | | |||||| || | | || |||||||| ||||| Sbjct 196487 CAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCTTG 196428 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||||| | || | | || ||| || ||||| | || || ||||| Sbjct 196427 AATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAACTTCCAATGTGATGGTTTT 196368 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| ||||||| ||||| Sbjct 196367 GCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| ||||| ||||||||||| || | || || | |||||||| | Sbjct 195857 ATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTG 195798 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||||||||| | | ||| || || | | || |||||||| ||||||||||| Sbjct 195797 CTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTT 195738 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | |||| ||| || ||||| | || || || || || || Sbjct 195737 AGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTCTTTCCAGT 195678 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || | |||||| Sbjct 195677 CAATGTTTTAACAAAAATCTGCAT 195654 >seq10951 Length=171266 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || || |||||||||||||| |||| || || | ||||| Sbjct 139792 GAGTACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATC 139851 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| ||||||||||| | | || || || | | ||| |||||||| || Sbjct 139852 TTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTC 139911 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | |||| ||| ||| || || | ||| || || Sbjct 139912 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGT 139971 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| ||||| ||||||| ||||||||| Sbjct 139972 CTTACCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153517933938777