Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq9576 116 3e-21 seq9744 100 2e-16 >seq9576 Length=1569244 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| ||||| |||||||| || ||| ||||| ||||| | Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || || ||||| ||||| |||| |||||| Sbjct 196170 GATACTATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 196229 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | || ||||| || ||||||||| | || || | || || || Sbjct 196230 CAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 196289 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||||||||| | ||||| || ||||||||||| ||||| Sbjct 196290 ATCCAAAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGTGG 196336 Score = 109 bits (120), Expect = 5e-19 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| || || || || || || || ||||||||||||||| |||| ||| || Sbjct 195423 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCT 195482 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| || ||| | || ||| |||||| |||||||||||| |||| || Sbjct 195483 TCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGAC 195542 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 111274 |||||||| || || | ||| || || || | |||||| | | | ||| | |||| Sbjct 195543 CAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTAT--CAGATT 195600 Query 111275 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111317 ||||||| || |||||||| ||||| ||||| || | ||||| Sbjct 195601 ATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCT 195643 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || ||||| |||||||| || ||| ||||| ||||| | Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || ||| |||||| ||||| ||||| |||| |||||| Sbjct 195942 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 196001 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | || ||||| || ||||||||| | || || | || ||||| Sbjct 196002 CAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196061 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||||||||| | ||||| || ||||||||||| || || Sbjct 196062 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196108 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| ||||| || || ||||| || ||||| ||||| | Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || ||| |||||| ||||| ||||| |||| |||||| Sbjct 195714 GACACTATCGAAAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 195773 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || ||||| || ||||||||| | || || | || || || Sbjct 195774 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAAC 195833 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||||||||| | ||||| || ||||||||||| ||||| Sbjct 195834 ATCCAGAAAGAATCTACTTTGCATTTGGTATTGCGTCTGCGTGGTGG 195880 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || |||| ||||||||||| || ||||| ||||| | Sbjct 196338 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTTGAACCTTCC 196397 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || |||||| ||||| ||||| |||| ||||| Sbjct 196398 GATACTATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 196457 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || ||||| || ||||||||| | || || | || ||||| Sbjct 196458 CAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAAC 196517 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||||||||| | ||||| || ||||||||||| || || Sbjct 196518 ATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCGTCTGCGTGGAGG 196564 >seq9744 Length=475756 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| || || || || || ||||||||||| || ||||| |||| |||||| Sbjct 179679 AAAATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACAATTACATTGGAGGTGGAACCT 179620 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| | ||| | |||||| |||||| ||||| |||||| |||| || Sbjct 179619 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATTCCTCCAGAC 179560 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 ||||| | | |||| || || ||||||||||||||| | || | | ||||| Sbjct 179559 CAACAGCGTTTAATTTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTATCTGATTAC 179500 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| || || || | ||||| || ||||||| || ||||| Sbjct 179499 AACATTCAAAAGGAGTCAACTTTGCATTTGGTCCTGCGTCTCCGTGGTGG 179450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421705879938712