Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10162 273 2e-68 seq9684 82.4 8e-11 >seq10162 Length=1180275 Score = 273 bits (302), Expect = 2e-68 Identities = 557/822 (68%), Gaps = 9/822 (1%) Strand=Plus/Plus Query 23212 CCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGAT 23271 ||||||||| | ||||| || || | ||| || |||||||| ||||| || ||||| Sbjct 71332 CCCATTTTTGG-TATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAA 71390 Query 23272 ATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATT 23329 || ||||||| || || ||||| ||||| || | || || || |||| Sbjct 71391 ATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATT--TTGCCAACATCCAATT 71448 Query 23330 CCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATAC 23389 | | || | ||| || |||||||||||||||| |||| || ||| | || || | Sbjct 71449 CAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTC 71508 Query 23390 CTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTT 23449 | |||| || ||| | || ||| || |||| | |||||| ||||||||| Sbjct 71509 CAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTC 71568 Query 23450 TAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAAC 23509 || |||| || |||| ||||| || ||| | | ||| || |||| | Sbjct 71569 GGATGATTTCAATAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTA 71628 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 |||||||||||||| | |||||| || | ||||||||||| || ||||| || | Sbjct 71629 CGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGC 71688 Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAA 23629 | ||||||| || ||||| |||| |||||| || | ||||| ||| || || | Sbjct 71689 CAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATA 71748 Query 23630 TACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGA 23687 |||||||||| || ||||| || | || |||| ||||| | || ||| | || || Sbjct 71749 TACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGAT--GA 71806 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||||| | ||||| |||||| || || ||||||||||| || || Sbjct 71807 AATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATT 71866 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || ||| | || || || | || |||||||| || || | ||||||||| Sbjct 71867 GAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACAT 71926 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 ||| || |||| |||||| || ||||| || || ||||| || || | ||||| | || Sbjct 71927 TTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCAC 71986 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 ||| || || | | || | || | |||||||||| || |||||||||||| || || Sbjct 71987 TTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGC 72046 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATC 23987 || || || ||||||| ||| |||| | ||||| || |||| | | |||||| Sbjct 72047 GAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATC 72106 Query 23988 ATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | | | ||||| || | ||||||||| || ||||||||||| Sbjct 72107 AGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 >seq9684 Length=559441 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 ||||| |||||||||||| |||| | | ||| | ||| | ||||||||||| |||||| Sbjct 346144 CATACTAAATTTTGGATTTCTGATCACAGGCATTTTTATTTGGGAAGTGCTAATATGGAC 346085 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGT 139530 ||| |||| ||||| || || |||||| | ||| Sbjct 346084 TGGAGATCTCTAACGCAGGTGAAAGAACTGGGT 346052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521354453441800