Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10951 127 1e-24 seq9576 111 1e-19 seq9744 98.7 7e-16 >seq10951 Length=171266 Score = 127 bits (140), Expect = 1e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||||||||| |||| | || | ||| | || |||| || || ||||| || Sbjct 139814 TCCTTTTGGATGTTGTAGTCGGACAAGGT-GCGACCATCTTCCAATTGTTTACCGGCGAA 139872 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || ||||||| || | ||||||||| || ||||| ||| | | Sbjct 139873 GATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACATT 139932 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | || ||||||| || || ||||| || ||||||||||| || Sbjct 139933 TTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTTACCGGTGAGGGTCTTGAC 139992 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 139993 GAAGATCTGCAT 140004 >seq9576 Length=1569244 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | ||| |||| || | || || || |||||||| || Sbjct 196571 TTGCATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATA 196512 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | || | || |||| |||||| ||||| |||||||||||||||||||| Sbjct 196511 GTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATC 196452 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | ||||||||| || || || ||| | || | || || |||| | Sbjct 196451 TGGAGGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGG 196392 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || || |||||||| |||||||||||||| Sbjct 196391 TTCAACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| |||||||| || |||| || ||| |||| |||| || || || ||||| Sbjct 196756 TCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAA 196697 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| ||| | ||||||||| || || || ||| | || Sbjct 196696 ATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTT 196637 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || |||| || || || || || || |||||||| ||| Sbjct 196636 TCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACG 196577 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 196576 AAGATTTGCAT 196566 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | ||| |||| || | || || |||||||||||||| Sbjct 196343 TTGCATACCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTA 196284 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | || | || |||| |||||| ||||| ||||||||||| || ||||| Sbjct 196283 GTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATC 196224 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | ||||||||| ||| ||||| ||| | || | || || |||| | Sbjct 196223 TGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGG 196164 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || || | ||| || ||||| |||||||| Sbjct 196163 TTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | ||| |||| || | || || || ||||||||||| Sbjct 195887 TTGCATACCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTA 195828 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | || | || |||| |||||| ||||| |||||||||||||| ||||| Sbjct 195827 GTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATC 195768 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGG 44282 || ||| | ||||||||| | | | | || |||| | | || | || ||||||| | Sbjct 195767 TGGAGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAG 195709 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || |||||||| || | || || || || || ||||| Sbjct 195708 GTTCAACTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | ||| |||| || | || || || |||||||| || Sbjct 196115 TTGCATACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATA 196056 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | || | || |||| |||||| ||||| |||||||| || || ||||| Sbjct 196055 GTCAGACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATC 195996 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | ||||||||| || || || |||| | ||| | || ||||||| | Sbjct 195995 TGGAGGAATACCTTCCTTGTCTTGAATTTTA-GCTTTGACGTTTTCGATAGTGTCGGAAG 195937 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || || | |||||| |||||||||||||| Sbjct 195936 GTTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 170/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||| ||||| || || || ||||| || ||||| Sbjct 195656 CATACCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATC 195597 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || || |||||||| || |||||||| | | || || |||| Sbjct 195596 TGATAATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGG 195537 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| || || |||| || ||| | || || || | | | Sbjct 195536 AGGAATGCCTTCTTTGTCCTGAATTTTA-GCTTTAACGTTTTCAATAGTATCTGAAGGCT 195478 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 ||||||||| ||||| || || || || | |||||||||||||| ||||| ||| Sbjct 195477 CCACCTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTGTTTC 195418 Query 44346 TGAAAATA 44353 |||||||| Sbjct 195417 TGAAAATA 195410 >seq9744 Length=475756 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||| || ||||| | | || | || || ||||| || || || || Sbjct 178345 CTCCTTTTGGATATTATAATCCGACAACGTACGACCATCTTCTAGCTGTTTGCCAGCGAA 178404 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||||| || | || | ||||||||| || ||||| ||| | | Sbjct 178405 AATCAAACGCTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTAACATT 178464 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||||| || | || ||||| |||| || || |||||||| || | ||||| || Sbjct 178465 TTCTATGGTATCTGAGGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGAC 178524 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 178525 GAAAATTTGCAT 178536 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| ||||||||||| | | || | || |||| || || ||||| || Sbjct 179485 CTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAA 179544 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || |||||||| || |||| ||| | |||||||| ||| || || || | | Sbjct 179545 AATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATT 179604 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | ||||||||||| ||||| ||||| || || | ||||||||| Sbjct 179605 TTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTTGCCGGTCAAGGTCTTCAC 179664 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 179665 GAAGATCTGCAT 179676 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| || |||||||||| | || | || || ||||| || || || || Sbjct 179029 CTCCTTTTGAATATTGTAATCGGATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAA 179088 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||||| |||| || | ||||| || ||| || || ||| | | Sbjct 179089 AATCAAACGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCCTTGACATT 179148 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||||| || | | ||||| |||| || || |||||||| || | ||||| || Sbjct 179149 TTCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGAC 179208 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 179209 GAAAATTTGCAT 179220 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||| || |||||||||| | || || || | || || | || || || || || Sbjct 177549 TCCTTTTGAATATTGTAATCGGACAAGGTGCGGC-CATCTTCTAATTGTTTGCCAGCGAA 177607 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||||| || |||| || | ||||||||| ||| || || ||| | | Sbjct 177608 AATCAAACGCTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGATTTTGGCCTTGACATT 177667 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||||| || | | || || |||| ||||| || || || || | ||||| || Sbjct 177668 TTCTATGGTATCTGATGGCTCAACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGAC 177727 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 177728 GAAAATTTGCAT 177739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||||||||| | | || | || || ||||| || || || || Sbjct 178117 CTCCTTCTGAATGTTGTAATCAGATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAA 178176 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||||| |||| || | |||||||| ||| || || ||| | | Sbjct 178177 AATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTGGATTTTGGCCTTGACATT 178236 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | ||||| |||| || || |||||||| || | ||||| || Sbjct 178237 TTCAATTGTATCCGAAGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGAC 178296 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 178297 GAAAATTTGCAT 178308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || |||||||||| | ||| | || || | || || || || || Sbjct 178802 TCCTTCTGAATATTGTAATCGGATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAA 178861 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||||||||| |||| || | ||||||||| || || || ||| | || Sbjct 178862 ATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTT 178921 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 ||||||| || | | ||||| |||| || || |||||||| || | || || ||| Sbjct 178922 TCTATGGTATCTGATGGCTCCACTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACG 178981 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 178982 AAAATTTGCAT 178992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359900515684479