Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq9828 149 8e-31 seq10820 116 5e-21 >seq9828 Length=397621 Score = 149 bits (164), Expect = 8e-31 Identities = 231/329 (70%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 155730 CGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTAA 155789 ||| ||| ||||||||||||||||| || ||||| ||||||||||| || || ||| || Sbjct 146855 CGATTCATGGCCGTCGATTGAGCGGCACGCACCAAACCTTCCAATTCGGCACCACTGAAA 146914 Query 155790 TTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAGAT 155849 || ||||| | | || | || || | ||||| |||| || | | | ||| | Sbjct 146915 TTCTTAGTGGCCGCAGCCAGTTCTTTGCAATCTACATCGGGTGCAATTTTATTGAAATCA 146974 Query 155850 TTCAT---TTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAAT 155906 ||| ||| | ||| | | ||||||||| ||| |||| ||||| |||||| Sbjct 146975 CGCATACGTTTGGT---GTGAATACTCAAAATTTGACAACGACCCTGTTCATTGGGTAAG 147031 Query 155907 CCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCG 155966 | ||||| || | | |||||| || || || | || || ||||| ||||| | ||| Sbjct 147032 CTGATTTCCATTTGAACTTCCAAACGACCGGGACGTAGCAAAGCTTCATCAATCATATCG 147091 Query 155967 GGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTA 156026 | | ||||||||||| |||| | |||||||||||| ||| ||||| || ||||| Sbjct 147092 CGACGATTGGTCATACCAATGACAAGAATGTTGTTTAATTGTTCGACACCATCGATTTTG 147151 Query 156027 GACAATAATTGATTGACTACGGCGTCGTG 156055 | ||| || ||||| || || | ||||| Sbjct 147152 GCCAACAACTGATTTACCACAGTATCGTG 147180 Score = 95.1 bits (104), Expect = 2e-14 Identities = 203/296 (69%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 156156 GCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAAT 156215 ||||| |||||| || | | || || || ||||||||||||||||| | || | Sbjct 147458 GCCTCGGCAAACAAACGACGAATATTGGCCTCGGATTCACCCACATATTTATCCAAAATC 147517 Query 156216 TCAGGACCGTTAACTATTTTGACGGGTCGTG-ATTTAAAAGCTTGAGCGATACAGCGAGC 156274 | |||||| || || || ||| ||||| |||||| | || | | || ||||| Sbjct 147518 TGAGGACCATTGACAATCTTGGGTTCTCGTGCATTTAACA-TTTTACCAATTTGCCGAGC 147576 Query 156275 CATTAATGTTTTACCGCACCCAGGAGGTCCGTATA--ACAATACTCCTTTTATATGTTTA 156332 ||| || |||||||| |||||||| || || | | |||| || || | || || Sbjct 147577 CATCAAAGTTTTACCAGTACCAGGAGGACCATAGAGTAGAATA--CCCTTGACGTGCTTG 147634 Query 156333 CAACCTAATTTTTCAGTTATTTCTACCGGAACTGA-TCTGGAAGCAAATGCTCTTCGAAA 156391 || || |||| |||| | |||||| |||| ||| | || |||||||||| || || Sbjct 147635 CAGCCCAATTGTTCAATAATTTCTGGTGGAA-TGACACGCGATGCAAATGCTCGACGGAA 147693 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 || | |||||| |||||||| || || | ||||||| | |||| ||||| Sbjct 147694 TATAGCATTAAATTCCTTATCCAAACCACCAATTCCCATTTTACCGAAATCCCAAT 147749 >seq10820 Length=150301 Score = 116 bits (128), Expect = 5e-21 Identities = 198/285 (69%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 50616 CGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTTTTACCTCCGTGT 50675 || ||| |||||||||| ||||| || | ||||||| || || | | |||| || || Sbjct 111936 CGCATTATAATGACCGCTTGGAACCCTAGCGATATACATTTAATGGCTCTACCACCATGC 111995 Query 50676 CATGTTTTATG--TCAATTTTATGCCACAGACAATGTTTTATCCTGTCAATGTTATCAAA 50733 ||| | |||| ||||||||||| || | ||| || |||||||| ||| Sbjct 111996 CAT--TGTATGGCTCAATTTTATGTGGCAAATGATGAATTGTCCTGTCAGCTGACCCAAC 112053 Query 50734 GATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAACGT 50793 | ||||||||||| | |||||||| ||||| | || ||||||||||| ||||| | Sbjct 112054 GTAGTGCTGATATGGGACTGGGCGTTCCATTCAATATCGCCTCTTACGCTTTGTTAACTT 112113 Query 50794 ATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAATTTATTCATACGTTAGGAGACG 50853 || |||| || || | | | ||||| || || |||||||| | || || || Sbjct 112114 ATATGATTGCCCACATAACAGGTCTTAAACCAGGCGATTTTATTCACTCATTGGGTGATA 112173 Query 50854 CTCATATTTACCTCGATCACGTCGATGCTTTAAAGGAGCAATTGA 50898 | ||| | || | ||||||| || | ||||||||||| |||| Sbjct 112174 CACATGTCTATTTAAATCACGTTGAACCATTAAAGGAGCAGTTGA 112218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666904370379720