Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9576 111 1e-19 seq9744 100 3e-16 seq7037 87.8 2e-12 >seq9576 Length=1569244 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||||| || || ||||| ||||||||||| || Sbjct 196108 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196049 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||||||||||||||| |||| ||| ||||| || | ||| Sbjct 196048 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAGCGTTGTTGATCTGGAGGA 195989 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| |||| ||| | | ||||||| | || || Sbjct 195988 ATACCTTCCTTGT-CTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAAC 195930 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || |||| ||||||||||| || ||||| Sbjct 195929 TTCCAAGGTGATAGTTTTGCCAGTCAAGGTCTTTACGAAGATTTGCAT 195882 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||| ||| || || |||||||| |||||||||||||| Sbjct 196793 GCCTCCGCGAAGACGAAGAACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 196734 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || | || ||||| || || |||| || ||||| || | || Sbjct 196733 AAGCGTGCGTCCGTCCTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGG 196674 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| |||| || | ||| | | ||||| | || | Sbjct 196673 AATACCTTCCTTGT-CTTGAATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTA 196615 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || ||||| || ||||| ||||||||||| || ||||| Sbjct 196614 CTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||||| || || ||||| ||||||||||| || Sbjct 196564 CCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAGAC 196505 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||||||||||||||| |||| ||||| || || | ||| Sbjct 196504 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 196445 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| || | ||| | | ||| ||| | || || Sbjct 196444 ATACCTTCCTTGT-CTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAAC 196386 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || ||||| ||||||||||| || ||||| Sbjct 196385 TTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | |||||| | |||| ||| || || || ||||| || ||||| || || Sbjct 195652 CCTCCTCTTAGACGAAGGACCAAATGAAGTGTTGATTCTTTCTGGATATTATAATCTGAT 195593 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| || || || || || | |||||||| | ||| Sbjct 195592 AATGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGA 195533 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | || || |||||| ||| |||| |||| |||| || ||| || | |||||| Sbjct 195532 ATGCCTTCTTTGTCC-TGAATTTTAGCTTTAACGTTTTCAATAGTATCTGAAGGCTCCAC 195474 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || ||||| || || | ||||| ||||| |||||||| || Sbjct 195473 CTCCAAGGTAATGGTTTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 195423 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||||| || || ||||| ||||| ||||| || Sbjct 195880 CCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 195821 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||||||||||||||| |||| |||||||| || | ||| Sbjct 195820 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGA 195761 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| |||| ||| | | ||||||| | || || Sbjct 195760 ATACCTTCCTTGT-CTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAAC 195702 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| || || || ||||||||||| Sbjct 195701 TTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||||| || || || || ||||| ||||| || Sbjct 196336 CCACCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 196277 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||||||||||||||| |||| || ||||| || | ||| Sbjct 196276 AATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGAGGA 196217 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| || | || || | ||| | | ||| ||| | || || Sbjct 196216 ATACCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAAC 196158 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || |||| || ||||||||||| ||||| Sbjct 196157 TTCCAAGGTGATAGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 196110 >seq9744 Length=475756 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||| ||||| || ||||||||||||||| || || || Sbjct 178082 CCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGAT 178141 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || ||||| ||||| ||||| |||| ||||| ||||| | |||| Sbjct 178142 AAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGA 178201 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | ||||| ||| || |||| || | || || | ||| | ||| |||| Sbjct 178202 ATTCCTTCCTTATCC-TGGATTTTGGCCTTGACATTTTCA-ATTGTATC-CGAAGGCTCC 178258 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || |||| ||||| |||||||| ||||| Sbjct 178259 ACTTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || ||||| || || ||||| ||||| || || ||||| Sbjct 177512 GCCTCCGCGAAGACGAAGTACAAGATGTAGGGTCGATTCCTTTTGAATATTGTAATCGGA 177571 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | || ||||| ||||| |||| ||||||||||| | ||| Sbjct 177572 CAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGG 177631 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | ||||| ||| |||||| ||| | | || || | ||| || Sbjct 177632 AATACCTTCCTTATCCTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCAAC 177691 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || |||||||| |||| ||||| |||||||| ||||| Sbjct 177692 TTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 177739 >seq7037 Length=35088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||| | |||| ||||| || |||||||||||| ||||| || || Sbjct 22913 CCTCCACGTAAACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGAC 22972 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | || || ||||| || || | || ||||| |||| ||| Sbjct 22973 AATGTTCGGCCATCTTCCAATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGA 23032 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| | || |||| || | | |||||| | ||| || Sbjct 23033 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTGTCAGATGGCTCAAC 23091 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 ||| | ||||| || || ||||| || ||||| || || |||||||| || ||| Sbjct 23092 CTCTAGGGTTATAGTCTTGCCCGTAAGGGTCTTAACAAATATCTGCATCTTGTCG 23146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462185609724400