Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq40 122 9e-23 seq3263 91.5 2e-13 >seq40 Length=47542 Score = 122 bits (134), Expect = 9e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || |||||||| | |||||| ||||||||||| ||||| ||||| || ||| ||| Sbjct 39913 ATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGA 39854 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||| || |||| |||||||| | ||| ||||| |||||||||| | || Sbjct 39853 AACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGA 39794 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 || ||||| || ||||| || ||||||||||| || |||| ||| Sbjct 39793 TTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTG 39747 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 |||||||| ||||||||| |||||||||||| | ||| |||| |||||||| || Sbjct 40204 AAAGTTAAACCTGGCATTAATCCTCGTTTCTTCATCCAAAATAATGCAGCAAAACTTCCA 40145 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || || |||||||| ||||| | ||||| || | ||||| ||| | | || || | Sbjct 40144 GAGAAAAATATACCTTCAACGGCAGCAAATGCAACTAATCTTTCACCAAAAGTCGCTTTA 40085 Query 16373 TTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT 16432 ||| | ||||| ||| | |||| || || |||| ||||| ||| ||| ||||| Sbjct 40084 CTATCGCTTATCCACTTCAGAGCCCAATCTGCCTTTTTTTTTACACACGGCATGGTTTCA 40025 Query 16433 ATGGCCTTAAACAA 16446 || || ||||| || Sbjct 40024 ATAGCATTAAATAA 40011 >seq3263 Length=267844 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 119083 GCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAATAC 119142 || || || ||||| | | ||||||||||||| ||||||||||||||||| || | | Sbjct 108268 GCTCTATCTGGAGTATCAGTCCATTCCAGTATCTTTTTAGCCCAGTACATGCGAAGGAAA 108209 Query 119143 CCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGAGGATCGTGT 119202 |||||||| || || || || | || ||| | |||||| | ||||| ||| ||| ||| Sbjct 108208 CCGTGCATCTTGCCTTCCTTTACCAACTGTATTTGTGCAGAATTCCACAGATCATCATGT 108149 Query 119203 GTACG 119207 || || Sbjct 108148 GTGCG 108144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511388701426400