Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1102 129 5e-25 >seq1102 Length=1235416 Score = 129 bits (142), Expect = 5e-25 Identities = 243/347 (70%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 18795 CTTGGCCCCA-TTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCA 18853 ||||| |||| |||| || || || ||| | |||| ||| || |||||| ||| ||| Sbjct 520665 CTTGGGCCCAGTTTATGGATTTCAATGGCGTCATTATGGTGCTGAATATGTAGA-TGTGC 520607 Query 18854 AT-CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAA 18912 || || | || | | |||| || |||||||| |||| || || |||||||||||| Sbjct 520606 ATACAGATTACTCAGGAAAAGGTATTGATCAGCTTCAAAACGTCATCAATACAATTAAAA 520547 Query 18913 CAAACCCAGAAAGCCGACGAATGATTAT-ATCGTCTTGGAATCCAAAGGATATCCCCTTA 18971 | ||||| || | |||||| |||| || | | ||||||||| ||| | || | Sbjct 520546 CTAACCCTGACGATAGGCGAATGCTTATGATTG-CATGGAATCCATGCGATGTACCTAAA 520488 Query 18972 ATGGTACTACCTCCATGTCACACGTTATGT-CAGTTTTACGTTGCAAACGGTGAATTATC 19030 |||| |||| |||||||| ||| || ||||||| || || | || | | || Sbjct 520487 ATGGCCTTACCACCATGTCA-TTGTTTGGTACAGTTTTTTGTCGCTGATGGATATCTGTC 520429 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 || ||| | ||||| |||| | || ||||| || || ||||| || || ||||| | Sbjct 520428 GTGTCAAATGTACCAACGATCAGCTGACATGGGTCTAGGAGTACCCTTTAATATTGCCAG 520369 Query 19091 ATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAA 19137 ||| || | ||||| ||||| |||| ||||| || ||| |||||| Sbjct 520368 TTATTCATTACTTACATACATGATAGCCCATGTCACTGGA-TTAAAA 520323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399484426800900