Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1102 168 5e-37 >seq1102 Length=1235416 Score = 168 bits (186), Expect = 5e-37 Identities = 244/342 (71%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 ||||||||||||| ||||| | || | || ||||| || ||||| ||||| || || | Sbjct 520331 CAGTGACATGGGCTATCATGTATGTAAGTAATGAATAACTGGCAATATTAAAGGGTACTC 520390 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 |||| ||||| |||||||||| ||| || | ||||| || || | ||||||| ||| Sbjct 520391 CTAGACCCATGTCAGCTGATCGTTGGTACATTTGACACGACAGATATCCATCAGCGACAA 520450 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCC 97294 ||||||| ||| |||||| || || || |||||||| || ||||| | ||||| Sbjct 520451 AAAACTGTACCAAACAATGACATGGTGGTAAGGCCATTTTAGGTACATCGCATGGATTCC 520510 Query 97295 AAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCT 97354 | ||| ||| | ||||| |||||| ||||| || | || ||||| || | | | Sbjct 520511 ATGCAATCATAAGCATTCGCCTATCGTCAGGGTTAGTTTTAATTGTATTGATGACGTTTT 520570 Query 97355 TTAATTGATCAACGCCTTCTCCACCATAAT-TGTGCTTAAGACCTTGATATTCTGCTCCA 97413 | ||||||| |||| ||| |||| ||| | | | || |||||| || ||| Sbjct 520571 GAAGCTGATCAATACCTTTTCCTGAGTAATCTGT-ATGCACATCTACATATTCAGCACCA 520629 Query 97414 AAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 |||| | |||||| ||||||||||| || || | ||| ||| Sbjct 520630 TAATGACGCCATTGAAATCCATAAACTGGGCCCAAGTCACCT 520671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346767009751400