Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1102 187 4e-42 seq3263 145 1e-29 seq2154 131 3e-25 seq3666 127 3e-24 seq3604 113 7e-20 seq3365 91.5 2e-13 >seq1102 Length=1235416 Score = 187 bits (206), Expect = 4e-42 Identities = 253/352 (72%), Gaps = 3/352 (1%) Strand=Plus/Plus Query 205434 TTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAA 205493 |||||| ||| | ||| || ||||| || || | ||| |||||| |||| |||||| Sbjct 520323 TTTTAATCCAGTGACATGGGCTATCATGTATGTAAGTAATGAATAACTGGCAATATTAAA 520382 Query 205494 TGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATT 205553 ||||| |||| |||||| |||||||||| ||| ||||||||||| | |||||| Sbjct 520383 GGGTACTCCTAGACCCATGTCAGCTGATCGTTGGTACATTTGACACGACAGATAT---CC 520439 Query 205554 ATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATC 205613 || | ||| ||| ||||| ||||||||||| ||||||| |||| || ||||| Sbjct 520440 ATCAGCGACAAAAAACTGTACCAAACAATGACATGGTGGTAAGGCCATTTTAGGTACATC 520499 Query 205614 TATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatt 205673 |||||||| || | | | || ||| ||||| ||| |||| ||| |||| Sbjct 520500 GCATGGATTCCATGCAATCATAAGCATTCGCCTATCGTCAGGGTTAGTTTTAATTGTATT 520559 Query 205674 tatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATA 205733 || | | | | ||||||| |||| || |||| ||||| || ||| | ||| Sbjct 520560 GATGACGTTTTGAAGCTGATCAATACCTTTTCCTGAGTAATCTGTATGCACATCTACATA 520619 Query 205734 TTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 || ||||||| |||||||||||||||| ||||||||||| || || |||||| Sbjct 520620 TTCAGCACCATAATGACGCCATTGAAATCCATAAACTGGGCCCAAGTCACCT 520671 >seq3263 Length=267844 Score = 145 bits (160), Expect = 1e-29 Identities = 198/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 202778 CATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTA 202837 ||||||||||| ||||||| |||||||| ||||| ||| ||||||| |||| | | Sbjct 108427 CATCCTTCATAGTTCATATACCTAATTTTTCCAAAAATTTCTCTTTCTCTCCACCCCTGA 108368 Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 |||||||||||||| ||||||||||||||||||||| | ||| |||| || || || || Sbjct 108367 TCATGAATACCACATATTGACCACATACATCCAACAAAACCACTTGGGTCGCGACCGTCC 108308 Query 202898 ATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTC 202957 || ||| || ||||| | || | |||| ||||| | | ||| Sbjct 108307 ATGCTATACTTGTCATTGAGATAAATGGCATCGGCCAGTGCTCTATCTGGAGTATCAGTC 108248 Query 202958 CATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATA 203017 ||||| | ||| ||||||||||| ||||| | | | || ||||| || || | | Sbjct 108247 CATTCCAGTATCTTTTTAGCCCAGTACATGCGAAGGAAACCGTGCATCTTGCCTTCCTTT 108188 Query 203018 ATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGT 203058 | || ||| |||||| | |||||| | || ||||| || Sbjct 108187 ACCAACTGTATTTGTGCAGAATTCCACAGATCATCATGTGT 108147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 203527 ATGTTTAATAATAGGTATAAATTCAGTTAAATATTCTGATAATTTATAATTTATTTTATT 203586 |||||| || | ||| ||||| |||||| | || | |||||| | ||| ||||| || Sbjct 107411 ATGTTTGATCACTGGTGGGAATTCTGTTAAAAACTCGGGTAATTTGTTATTGATTTTGTT 107352 Query 203587 TCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAATATT 203646 || || ||| |||||||||||||| ||| | | || | |||||| ||||||||||| Sbjct 107351 TCGTATTGTTCTTGCAGAATATTCTTGTTTGTCAGAGGCTACCCAACAAGGTACAATATT 107292 Query 203647 ATGTGAATCAACTTG-ATAA 203665 ||| | ||| || || |||| Sbjct 107291 ATGGGCATCTACCTGTATAA 107272 >seq2154 Length=352369 Score = 131 bits (144), Expect = 3e-25 Identities = 171/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || || || | | | | |||||||| || Sbjct 250911 ATGCAAATTTTTGTTAAAACCCTTACGGGTAAGACAAGTATTCTCGAGATTGAGTCATCA 250852 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||||||||| |||||| ||||||||||||| || || || |||||| Sbjct 250851 GATTCTATTGAAAATTTAAAATCGAAAATCTAAGATAAAGAAGGCATTCCCCCGGATCAA 250792 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| || |||||||| || || ||||| || ||| |||| |||||| ||||| ||| Sbjct 250791 CAACCTCTAATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTATCTGATTACAAT 250732 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || | | || |||||| | || || || | |||||| |||||||| ||| || Sbjct 250731 AT---ACAGGAGTCAACTCTTCACTTAGTACTTCGTTTAAGAGGTGGTGCTAAGAA 250679 >seq3666 Length=820529 Score = 127 bits (140), Expect = 3e-24 Identities = 176/245 (72%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| || ||||| || || ||||| | || | ||| || | Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || || ||||| ||||||||||| ||||| || ||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| ||||| ||| | || || | || ||| | || || || Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197471 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || | || |||||||| ||| | ||||||||||| ||| ||| Sbjct 197472 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGTATGCAAATCTTC 197531 Query 124778 ATAAA 124782 |||| Sbjct 197532 GTAAA 197536 Score = 127 bits (140), Expect = 3e-24 Identities = 176/245 (72%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| || ||||| || || ||||| | || | ||| || | Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || || ||||| ||||||||||| ||||| || ||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| ||||| ||| | || || | || ||| | || || || Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197699 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || | || |||||||| ||| | ||||||||||| ||| ||| Sbjct 197700 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGTATGCAAATCTTC 197759 Query 124778 ATAAA 124782 |||| Sbjct 197760 GTAAA 197764 Score = 127 bits (140), Expect = 3e-24 Identities = 176/245 (72%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| || ||||| || || ||||| | || | ||| || | Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || || ||||| ||||||||||| ||||| || ||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| ||||| ||| | || || | || ||| | || || || Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197927 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || | || |||||||| ||| | ||||||||||| ||| ||| Sbjct 197928 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGTATGCAAATCTTC 197987 Query 124778 ATAAA 124782 |||| Sbjct 197988 GTAAA 197992 Score = 118 bits (130), Expect = 2e-21 Identities = 174/245 (71%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || |||||||| ||| | || |||| || | Sbjct 197064 ATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCT 197123 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | ||| ||||| ||||| || |||||||| ||||| |||||| Sbjct 197124 GATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGATCAA 197183 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||| ||| | || || | || ||| | || || || Sbjct 197184 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197243 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || | || ||||| || ||| | ||||||||||| ||| ||| Sbjct 197244 ATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGAGGTGGTATGCAAATCTTC 197303 Query 124778 ATAAA 124782 |||| Sbjct 197304 GTAAA 197308 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| || ||||| || || ||||| | || | ||| || | Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || || || ||||| ||||||||||| ||||| || ||| Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 198095 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| ||||| ||| | || || | || ||| | || || || Sbjct 198096 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 198155 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| ||| | || ||||| || ||| | |||||||| Sbjct 198156 ATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGAGGTGG 198202 >seq3604 Length=163256 Score = 113 bits (124), Expect = 7e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || |||||||| || ||| | || | ||| | Sbjct 65883 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 65824 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| ||| | ||| ||||| ||||| || ||||| || ||||| || || Sbjct 65823 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65764 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || ||| | || |||||| || || || Sbjct 65763 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 65704 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 |||||| |||||||| || | || || || | ||| | || ||||| || ||| ||| Sbjct 65703 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGTGGAATGCAAATTTC 65644 Query 124778 ATAAA 124782 |||| Sbjct 65643 TTAAA 65639 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || |||||||| || ||| | || | ||| | Sbjct 66111 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66052 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| ||| | ||| ||||| ||||| || ||||| || ||||| || || Sbjct 66051 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 65992 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || ||| | || |||||| || || || Sbjct 65991 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 65932 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| || | || || || | ||| | || || || || ||| || Sbjct 65931 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAATGCAAATTT 65873 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || |||||||| || ||| | || | ||| | Sbjct 66339 AATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66280 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| ||| | ||| ||||| ||||| || ||||| || ||||| || || Sbjct 66279 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66220 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||||||||| || ||| | || |||||| || || || Sbjct 66219 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 66160 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| || | || || || | ||| | || || || || ||| || Sbjct 66159 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAATGCAAATTT 66101 Score = 100 bits (110), Expect = 4e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || |||||||| || ||| | || | ||| | Sbjct 66566 ATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66507 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | ||| ||||| ||||| || ||||| || ||||| || ||| Sbjct 66506 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66447 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || ||||||||||| || ||| | || |||||| || || ||| Sbjct 66446 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66387 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| |||||||| || | || || || | ||| | || || || || ||| || Sbjct 66386 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAATGCAAATTT 66329 >seq3365 Length=261510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || || || |||||||| | ||||||||||| || || ||||| || ||| |||| Sbjct 113759 AGGCATTCCCCCGGATCAACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAAGATGGTCG 113818 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||| ||||| ||||| || || || |||||| | || || || | || ||| | Sbjct 113819 CACATTATCTGATTACAATATACAGAAGGAGTCAACTCTTCACTTAGTACTTCGCTTAAG 113878 Query 124760 AGGTGGTATTAAAAA 124774 ||||||| ||| || Sbjct 113879 AGGTGGTGCTAAGAA 113893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755418038336000