Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3666 125 6e-24 seq3604 96.9 3e-15 seq1800 87.8 2e-12 >seq3666 Length=820529 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||||||||| | ||||| ||||||||||||||||| ||| Sbjct 197292 TACCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCG- 197234 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | |||| |||| || || || || ||||| || |||| | |||||| ||||| || Sbjct 197233 -GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGG 197175 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || ||||||||| ||||| |||||| | ||| | || || | ||| Sbjct 197174 TGGGATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTC 197115 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || | || | ||||| || |||| |||||| ||||| ||||||||| Sbjct 197114 AACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 197063 >seq3604 Length=163256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 || ||||| | |||||| ||||| ||||| ||||| || | | || || || ||| || Sbjct 66358 ACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAAT-GTACGGCCATCTTC 66416 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||||| ||| |||| | ||||| || || || || || || ||||||||| Sbjct 66417 CAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTG 66476 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| | | ||||| || || || | || | ||||| Sbjct 66477 GATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTT 66536 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||||||||| ||||| || ||||| Sbjct 66537 GCCAGTCAGAGTTTTCACAAAGATTTGCAT 66566 >seq1800 Length=381758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||| | |||||||||| ||||| |||||||||||||||||||| || ||| ||| Sbjct 276138 AATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGACAGAGTACGC 276079 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||| || || || || ||||| | || | ||| |||||||| ||||| || || Sbjct 276078 CCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGAATACC 276023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809145021840